JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDKN1C_chr11_2878218_2890775	0/0	g0040	1	0	1	0	0	0	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0041	1	0	0	1	0	0	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0042	1	0	1	0	0	0	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0043	1	0	1	0	0	0	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	g0044	1	1	0	0	0	0	CDKN1C	chr11	2878218	2890775
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0001	46	9	15	10	3	9	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0002	24	1	2	19	1	1	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0003	17	4	3	8	0	2	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0004	16	2	1	10	1	2	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0005	16	0	0	15	0	1	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0006	14	0	0	12	0	2	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0007	11	2	0	3	2	4	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0008	11	0	4	6	0	1	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0009	9	5	0	4	0	0	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0010	8	0	0	7	0	1	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/1	g0011	7	3	1	1	0	1	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0012	7	1	4	1	0	1	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0013	7	0	2	1	1	3	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0014	7	5	0	1	0	1	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0015	6	0	0	6	0	0	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	1/0	g0016	5	3	1	0	0	0	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0017	5	0	1	4	0	0	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0018	4	3	1	0	0	0	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0019	4	0	1	3	0	0	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0020	4	4	0	0	0	0	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0021	4	4	0	0	0	0	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0022	3	0	2	0	1	0	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0023	3	0	1	0	2	0	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0024	3	0	2	0	0	1	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0025	3	0	0	3	0	0	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0026	3	1	0	1	0	1	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0027	3	0	1	2	0	0	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0028	3	0	1	0	1	1	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0029	3	2	1	0	0	0	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0030	2	0	0	0	1	1	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0031	2	1	1	0	0	0	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0032	2	0	1	0	0	1	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0033	2	0	0	2	0	0	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0034	2	0	1	0	0	1	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0035	2	2	0	0	0	0	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0036	2	2	0	0	0	0	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0037	2	0	0	2	0	0	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0038	2	0	0	2	0	0	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0039	2	0	0	2	0	0	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0040	2	0	0	1	0	1	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0041	1	1	0	0	0	0	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0042	1	0	1	0	0	0	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0043	1	1	0	0	0	0	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0044	1	1	0	0	0	0	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	g0045	1	0	0	1	0	0	CDKN2AIPNL	chr5	134397065	134416881