JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDKN2AIP_chr4_183439636_183454064	0/0	g0004	12	0	0	9	1	2	CDKN2AIP	chr4	183439636	183454064
CDKN2AIP_chr4_183439636_183454064	0/0	g0005	1	1	0	0	0	0	CDKN2AIP	chr4	183439636	183454064
CDKN2AIP_chr4_183439636_183454064	0/0	g0006	1	0	0	1	0	0	CDKN2AIP	chr4	183439636	183454064
CDKN2A_chr9_21962752_21979857	0/0	g0001	109	14	12	70	1	12	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0002	39	0	11	15	7	6	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0003	19	13	0	2	0	4	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0004	18	11	1	2	2	2	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0005	10	0	9	1	0	0	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0006	7	0	3	0	1	3	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0007	5	1	1	2	0	1	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0008	4	0	0	4	0	0	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0009	4	0	0	3	0	1	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0010	4	0	0	4	0	0	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0011	4	0	0	4	0	0	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0012	4	0	3	0	1	0	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0013	4	0	4	0	0	0	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0014	4	0	0	4	0	0	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0015	4	0	0	3	0	1	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0016	3	1	2	0	0	0	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0017	3	1	1	0	0	1	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0018	3	1	1	0	0	1	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0019	3	0	1	0	0	2	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0020	3	3	0	0	0	0	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0021	3	0	2	1	0	0	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0022	3	3	0	0	0	0	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0023	3	0	1	2	0	0	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0024	3	0	0	3	0	0	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0025	3	3	0	0	0	0	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0026	3	0	0	3	0	0	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0027	2	0	1	0	1	0	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0028	2	0	0	2	0	0	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0029	2	0	0	1	0	1	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0030	2	0	0	2	0	0	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0031	2	0	0	2	0	0	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0032	2	0	0	2	0	0	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0033	2	0	1	0	0	1	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0034	2	1	1	0	0	0	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0035	2	0	2	0	0	0	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0036	2	0	2	0	0	0	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0037	2	0	0	2	0	0	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0038	2	1	1	0	0	0	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0039	2	0	0	2	0	0	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0040	2	1	1	0	0	0	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0041	2	0	1	0	1	0	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0042	2	0	0	2	0	0	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0043	2	0	0	2	0	0	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0044	2	1	0	1	0	0	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0045	2	2	0	0	0	0	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0046	2	2	0	0	0	0	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	g0047	1	0	1	0	0	0	CDKN2A	chr9	21962752	21979857