JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDKN2A_chr9_21962752_21999392	0/0	g0348	1	1	0	0	0	0	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0349	1	1	0	0	0	0	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0350	1	1	0	0	0	0	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0351	1	1	0	0	0	0	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0352	1	1	0	0	0	0	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0353	1	1	0	0	0	0	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0354	1	1	0	0	0	0	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0355	1	1	0	0	0	0	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0356	1	1	0	0	0	0	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0357	1	1	0	0	0	0	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0358	1	0	1	0	0	0	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0359	1	1	0	0	0	0	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0360	1	0	0	0	0	1	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0361	1	0	0	0	0	1	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0362	1	0	0	1	0	0	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0363	1	1	0	0	0	0	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0364	1	1	0	0	0	0	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0365	1	1	0	0	0	0	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0366	1	0	1	0	0	0	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0367	1	1	0	0	0	0	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0368	1	1	0	0	0	0	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0369	1	1	0	0	0	0	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0370	1	0	1	0	0	0	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0371	1	0	0	0	0	1	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0372	1	0	1	0	0	0	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0373	1	0	0	0	1	0	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0374	1	1	0	0	0	0	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0375	1	0	1	0	0	0	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0376	1	1	0	0	0	0	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0377	1	0	0	0	0	1	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0378	1	1	0	0	0	0	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0379	1	0	0	0	0	1	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0380	1	1	0	0	0	0	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0381	1	0	0	0	0	1	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0382	1	1	0	0	0	0	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0383	1	1	0	0	0	0	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0384	1	1	0	0	0	0	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0385	1	1	0	0	0	0	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0386	1	1	0	0	0	0	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0387	1	1	0	0	0	0	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0388	1	1	0	0	0	0	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	g0389	1	1	0	0	0	0	CDKN2A	chr9	21962752	21999392
CDKN2B_chr9_21997903_22014305	0/0	g0001	94	9	26	42	4	13	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	g0002	43	2	15	13	6	7	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	g0003	34	1	19	10	0	4	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	g0004	20	19	1	0	0	0	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	g0005	20	0	0	20	0	0	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	g0006	19	6	4	1	3	5	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	g0007	16	0	0	15	0	1	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	g0008	12	0	0	12	0	0	CDKN2B	chr9	21997903	22014305