JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDKN2B_chr9_21997903_22014305	0/0	g0059	1	0	0	1	0	0	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	g0060	1	1	0	0	0	0	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	g0061	1	1	0	0	0	0	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	g0062	1	0	0	1	0	0	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	g0063	1	0	0	1	0	0	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	g0064	1	0	0	0	1	0	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	g0065	1	0	0	0	0	1	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	g0066	1	0	0	1	0	0	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	g0067	1	1	0	0	0	0	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	g0068	1	0	0	1	0	0	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	g0069	1	0	0	1	0	0	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	g0070	1	0	0	0	0	1	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	g0071	1	0	0	0	0	1	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	g0072	1	0	0	1	0	0	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	g0073	1	0	1	0	0	0	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	g0074	1	0	0	1	0	0	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	g0075	1	0	0	0	0	1	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	g0076	1	0	0	0	1	0	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	g0077	1	0	0	0	1	0	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	g0078	1	0	1	0	0	0	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	g0079	1	0	0	1	0	0	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	g0080	1	0	0	0	1	0	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	g0081	1	0	0	0	0	1	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	1/0	g0082	1	0	0	0	0	0	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	g0083	1	0	0	0	0	1	CDKN2B	chr9	21997903	22014305
CDKN2B_chr9_21997903_22014305	0/0	g0084	1	0	0	1	0	0	CDKN2B	chr9	21997903	22014305
CDKN2C_chr1_50965245_50979634	0/0	g0001	177	20	39	91	5	22	CDKN2C	chr1	50965245	50979634
CDKN2C_chr1_50965245_50979634	0/0	g0002	57	20	14	10	4	9	CDKN2C	chr1	50965245	50979634
CDKN2C_chr1_50965245_50979634	0/0	g0003	27	2	3	19	2	1	CDKN2C	chr1	50965245	50979634
CDKN2C_chr1_50965245_50979634	0/0	g0004	18	17	1	0	0	0	CDKN2C	chr1	50965245	50979634
CDKN2C_chr1_50965245_50979634	0/0	g0005	13	12	1	0	0	0	CDKN2C	chr1	50965245	50979634
CDKN2C_chr1_50965245_50979634	0/0	g0006	9	1	5	0	1	2	CDKN2C	chr1	50965245	50979634
CDKN2C_chr1_50965245_50979634	0/0	g0007	7	7	0	0	0	0	CDKN2C	chr1	50965245	50979634
CDKN2C_chr1_50965245_50979634	0/0	g0008	6	6	0	0	0	0	CDKN2C	chr1	50965245	50979634
CDKN2C_chr1_50965245_50979634	0/0	g0009	3	0	0	3	0	0	CDKN2C	chr1	50965245	50979634
CDKN2C_chr1_50965245_50979634	0/0	g0010	2	2	0	0	0	0	CDKN2C	chr1	50965245	50979634
CDKN2C_chr1_50965245_50979634	0/0	g0011	2	0	1	0	1	0	CDKN2C	chr1	50965245	50979634
CDKN2C_chr1_50965245_50979634	0/0	g0012	2	0	2	0	0	0	CDKN2C	chr1	50965245	50979634
CDKN2C_chr1_50965245_50979634	0/0	g0013	2	0	1	0	1	0	CDKN2C	chr1	50965245	50979634
CDKN2C_chr1_50965245_50979634	0/0	g0014	1	1	0	0	0	0	CDKN2C	chr1	50965245	50979634
CDKN2C_chr1_50965245_50979634	0/0	g0015	1	1	0	0	0	0	CDKN2C	chr1	50965245	50979634
CDKN2C_chr1_50965245_50979634	0/0	g0016	1	0	1	0	0	0	CDKN2C	chr1	50965245	50979634
CDKN2C_chr1_50965245_50979634	0/0	g0017	1	0	0	1	0	0	CDKN2C	chr1	50965245	50979634
CDKN2C_chr1_50965245_50979634	0/0	g0018	1	1	0	0	0	0	CDKN2C	chr1	50965245	50979634
CDKN2C_chr1_50965245_50979634	0/0	g0019	1	1	0	0	0	0	CDKN2C	chr1	50965245	50979634
CDKN2C_chr1_50965245_50979634	0/0	g0020	1	0	1	0	0	0	CDKN2C	chr1	50965245	50979634
CDKN2C_chr1_50965245_50979634	0/0	g0021	1	1	0	0	0	0	CDKN2C	chr1	50965245	50979634
CDKN2C_chr1_50965245_50979634	0/0	g0022	1	1	0	0	0	0	CDKN2C	chr1	50965245	50979634
CDKN2C_chr1_50965245_50979634	0/0	g0023	1	1	0	0	0	0	CDKN2C	chr1	50965245	50979634
CDKN2C_chr1_50965245_50979634	0/0	g0024	1	0	1	0	0	0	CDKN2C	chr1	50965245	50979634