JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDKN2D_chr19_10561460_10573979	0/0	g0001	195	23	27	135	1	9	CDKN2D	chr19	10561460	10573979
CDKN2D_chr19_10561460_10573979	0/1	g0002	182	46	38	49	14	34	CDKN2D	chr19	10561460	10573979
CDKN2D_chr19_10561460_10573979	1/0	g0003	11	0	6	0	1	3	CDKN2D	chr19	10561460	10573979
CDKN2D_chr19_10561460_10573979	0/0	g0004	8	7	1	0	0	0	CDKN2D	chr19	10561460	10573979
CDKN2D_chr19_10561460_10573979	0/0	g0005	3	3	0	0	0	0	CDKN2D	chr19	10561460	10573979
CDKN2D_chr19_10561460_10573979	0/0	g0006	3	3	0	0	0	0	CDKN2D	chr19	10561460	10573979
CDKN2D_chr19_10561460_10573979	0/0	g0007	1	0	0	1	0	0	CDKN2D	chr19	10561460	10573979
CDKN2D_chr19_10561460_10573979	0/0	g0008	1	1	0	0	0	0	CDKN2D	chr19	10561460	10573979
CDKN2D_chr19_10561460_10573979	0/0	g0009	1	0	0	1	0	0	CDKN2D	chr19	10561460	10573979
CDKN2D_chr19_10561460_10573979	0/0	g0010	1	1	0	0	0	0	CDKN2D	chr19	10561460	10573979
CDKN2D_chr19_10561460_10573979	0/0	g0011	1	1	0	0	0	0	CDKN2D	chr19	10561460	10573979
CDKN2D_chr19_10561460_10573979	0/0	g0012	1	0	0	1	0	0	CDKN2D	chr19	10561460	10573979
CDKN2D_chr19_10561460_10573979	0/0	g0013	1	1	0	0	0	0	CDKN2D	chr19	10561460	10573979
CDKN2D_chr19_10561460_10573979	0/0	g0014	1	0	0	1	0	0	CDKN2D	chr19	10561460	10573979
CDKN3_chr14_54392007_54425218	1/0	g0001	63	8	14	33	3	4	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	g0002	30	0	9	9	4	8	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	g0003	20	2	0	16	0	2	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	g0004	8	1	3	3	1	0	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	g0005	8	8	0	0	0	0	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	g0006	8	0	2	1	3	2	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	g0007	6	0	3	3	0	0	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	g0008	5	1	3	1	0	0	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	g0009	5	0	3	0	0	2	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	g0010	5	0	5	0	0	0	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	g0011	5	0	0	5	0	0	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	g0012	5	1	0	4	0	0	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	g0013	5	4	1	0	0	0	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	g0014	5	0	1	4	0	0	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	g0015	4	0	0	4	0	0	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	g0016	4	0	0	4	0	0	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	g0017	4	0	0	4	0	0	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	g0018	4	4	0	0	0	0	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	g0019	4	0	0	4	0	0	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	g0020	4	4	0	0	0	0	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	g0021	4	4	0	0	0	0	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	g0022	3	0	0	2	0	1	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	g0023	3	0	1	2	0	0	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	g0024	3	0	0	3	0	0	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	g0025	3	3	0	0	0	0	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	g0026	3	0	0	3	0	0	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	g0027	3	0	1	0	1	1	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	g0028	3	3	0	0	0	0	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	g0029	3	0	0	0	0	3	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	g0030	3	0	0	3	0	0	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	g0031	2	2	0	0	0	0	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	g0032	2	0	0	0	0	2	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	g0033	2	0	0	2	0	0	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	g0034	2	0	0	2	0	0	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	g0035	2	0	0	2	0	0	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	g0036	2	2	0	0	0	0	CDKN3	chr14	54392007	54425218