JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDON_chr11_125951821_126067866	0/0	g0316	1	1	0	0	0	0	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	g0317	1	1	0	0	0	0	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	g0318	1	1	0	0	0	0	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	g0319	1	1	0	0	0	0	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	g0320	1	1	0	0	0	0	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	g0321	1	1	0	0	0	0	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	g0322	1	1	0	0	0	0	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	g0323	1	1	0	0	0	0	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	g0324	1	1	0	0	0	0	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	g0325	1	1	0	0	0	0	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	g0326	1	1	0	0	0	0	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	g0327	1	1	0	0	0	0	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	g0328	1	1	0	0	0	0	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	g0329	1	1	0	0	0	0	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	g0330	1	0	0	1	0	0	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	g0331	1	1	0	0	0	0	CDON	chr11	125951821	126067866
CDPF1_chr22_46239013_46255293	0/0	g0001	136	18	36	52	9	21	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0002	16	14	2	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0003	11	0	6	3	0	2	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0004	11	5	2	0	0	4	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0005	9	9	0	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0006	8	0	1	5	0	2	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0007	6	6	0	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0008	4	3	1	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0009	4	4	0	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0010	4	4	0	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0011	3	3	0	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0012	3	1	2	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0013	3	0	0	3	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0014	3	0	1	0	1	1	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/1	g0015	3	0	1	0	1	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0016	3	0	1	0	1	1	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0017	3	3	0	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0018	3	3	0	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0019	2	0	2	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0020	2	2	0	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0021	2	2	0	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0022	1	1	0	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0023	1	1	0	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0024	1	1	0	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0025	1	0	0	0	0	1	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	1/0	g0026	1	0	0	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0027	1	0	0	0	0	1	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0028	1	1	0	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0029	1	1	0	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0030	1	1	0	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0031	1	0	0	0	0	1	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0032	1	0	0	0	0	1	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0033	1	1	0	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0034	1	1	0	0	0	0	CDPF1	chr22	46239013	46255293