JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDPF1_chr22_46239013_46255293	0/0	g0035	1	1	0	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0036	1	1	0	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0037	1	1	0	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0038	1	1	0	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0039	1	0	0	1	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0040	1	0	1	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0041	1	0	0	1	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0042	1	0	0	1	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0043	1	0	0	0	0	1	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0044	1	0	1	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0045	1	0	1	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0046	1	0	0	0	0	1	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0047	1	0	0	1	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0048	1	0	1	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0049	1	0	0	1	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0050	1	1	0	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0051	1	0	0	0	0	1	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0052	1	0	1	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0053	1	1	0	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0054	1	0	1	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0055	1	1	0	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0056	1	1	0	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0057	1	1	0	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0058	1	1	0	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0059	1	1	0	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0060	1	0	1	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0061	1	1	0	0	0	0	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	g0062	1	1	0	0	0	0	CDPF1	chr22	46239013	46255293
CDR2L_chr17_74982632_75010800	0/0	g0001	11	0	1	8	1	1	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	g0002	10	1	0	4	2	3	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	g0003	6	5	1	0	0	0	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	g0004	6	0	0	5	1	0	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	g0005	5	0	0	5	0	0	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	g0006	5	5	0	0	0	0	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	g0007	4	0	0	4	0	0	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	g0008	4	4	0	0	0	0	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	g0009	4	1	2	1	0	0	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	g0010	4	0	1	0	0	3	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	g0011	4	1	3	0	0	0	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	g0012	4	0	2	0	1	1	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	g0013	4	0	2	2	0	0	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	g0014	4	0	0	4	0	0	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	g0015	4	0	0	4	0	0	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	g0016	3	0	3	0	0	0	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	g0017	3	2	1	0	0	0	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	g0018	3	3	0	0	0	0	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	g0019	3	0	1	0	0	2	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	g0020	3	0	0	3	0	0	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	g0021	3	1	0	0	0	2	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	g0022	3	3	0	0	0	0	CDR2L	chr17	74982632	75010800