JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDRT15_chr17_14230673_14241862	0/0	g0001	147	44	12	77	2	12	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/1	g0002	101	3	20	56	9	12	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	g0003	57	1	11	33	4	8	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	g0004	46	23	9	12	1	1	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	g0005	23	0	11	7	0	5	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	g0006	20	0	1	18	0	1	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	g0007	11	0	0	10	0	1	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	g0008	9	1	8	0	0	0	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	g0009	6	6	0	0	0	0	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	1/0	g0010	5	3	1	0	0	0	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	g0011	4	0	0	4	0	0	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	g0012	4	3	1	0	0	0	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	g0013	4	3	1	0	0	0	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	g0014	3	3	0	0	0	0	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	g0015	3	0	0	0	0	3	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	g0016	2	1	1	0	0	0	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	g0017	2	0	0	2	0	0	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	g0018	2	0	1	0	0	1	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	g0019	2	0	0	2	0	0	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	g0020	2	2	0	0	0	0	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	g0021	1	0	0	1	0	0	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	g0022	1	1	0	0	0	0	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	g0023	1	1	0	0	0	0	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	g0024	1	1	0	0	0	0	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	g0025	1	0	1	0	0	0	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	g0026	1	0	0	1	0	0	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	g0027	1	1	0	0	0	0	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	g0028	1	0	0	1	0	0	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	g0029	1	1	0	0	0	0	CDRT15	chr17	14230673	14241862
CDRT4_chr17_15431015_15472621	0/0	g0001	37	2	9	21	2	3	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	g0002	13	0	8	1	4	0	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	g0003	9	0	4	5	0	0	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	g0004	9	0	0	7	0	2	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	g0005	7	0	0	7	0	0	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	g0006	6	0	0	6	0	0	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	g0007	6	6	0	0	0	0	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	g0008	6	0	2	1	2	1	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	g0009	5	1	4	0	0	0	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	g0010	5	0	1	4	0	0	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	g0011	4	0	0	3	0	1	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	g0012	4	4	0	0	0	0	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	g0013	4	0	2	0	0	2	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	g0014	4	4	0	0	0	0	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	g0015	4	0	4	0	0	0	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	g0016	4	0	0	4	0	0	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	g0017	4	0	2	0	1	1	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	g0018	4	1	3	0	0	0	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	g0019	4	4	0	0	0	0	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	g0020	4	2	2	0	0	0	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	g0021	3	0	1	2	0	0	CDRT4	chr17	15431015	15472621