JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDS1_chr4_84578127_84656334	0/0	g0351	1	0	1	0	0	0	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	g0352	1	1	0	0	0	0	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	g0353	1	1	0	0	0	0	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	g0354	1	0	1	0	0	0	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	g0355	1	1	0	0	0	0	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	g0356	1	1	0	0	0	0	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	g0357	1	1	0	0	0	0	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	g0358	1	1	0	0	0	0	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	g0359	1	1	0	0	0	0	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	g0360	1	1	0	0	0	0	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	g0361	1	1	0	0	0	0	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	g0362	1	0	0	0	0	1	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	g0363	1	0	0	1	0	0	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	g0364	1	0	0	1	0	0	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	g0365	1	0	1	0	0	0	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	g0366	1	1	0	0	0	0	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	g0367	1	0	0	0	1	0	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	g0368	1	0	1	0	0	0	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	g0369	1	0	0	0	0	1	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	g0370	1	0	1	0	0	0	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	g0371	1	0	0	0	0	1	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	g0372	1	1	0	0	0	0	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	g0373	1	1	0	0	0	0	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	g0374	1	1	0	0	0	0	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	g0375	1	1	0	0	0	0	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	g0376	1	0	0	0	0	1	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	g0377	1	0	0	0	0	1	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	g0378	1	1	0	0	0	0	CDS1	chr4	84578127	84656334
CDS2_chr20_5122008_5202887	0/0	g0001	2	0	0	2	0	0	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	g0002	2	0	0	2	0	0	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	g0003	2	0	1	0	0	1	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/1	g0004	2	0	0	0	0	1	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	g0005	2	0	0	1	1	0	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	g0006	2	0	0	2	0	0	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	g0007	2	0	0	2	0	0	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	g0008	2	0	0	1	0	1	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	g0009	2	0	0	2	0	0	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	g0010	2	0	1	0	1	0	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	g0011	2	2	0	0	0	0	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	g0012	2	2	0	0	0	0	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	g0013	1	0	1	0	0	0	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	g0014	1	1	0	0	0	0	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	g0015	1	1	0	0	0	0	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	g0016	1	1	0	0	0	0	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	g0017	1	1	0	0	0	0	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	g0018	1	1	0	0	0	0	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	g0019	1	0	1	0	0	0	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	g0020	1	1	0	0	0	0	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	g0021	1	1	0	0	0	0	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	g0022	1	1	0	0	0	0	CDS2	chr20	5122008	5202887