JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDS2_chr20_5122008_5202887	0/0	g0323	1	1	0	0	0	0	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	g0324	1	1	0	0	0	0	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	g0325	1	0	1	0	0	0	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	g0326	1	0	0	0	1	0	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	g0327	1	0	1	0	0	0	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	g0328	1	0	1	0	0	0	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	g0329	1	0	1	0	0	0	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	g0330	1	0	0	0	0	1	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	g0331	1	0	1	0	0	0	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	g0332	1	0	1	0	0	0	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	g0333	1	0	1	0	0	0	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	g0334	1	1	0	0	0	0	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	g0335	1	1	0	0	0	0	CDS2	chr20	5122008	5202887
CDS2_chr20_5122008_5202887	0/0	g0336	1	1	0	0	0	0	CDS2	chr20	5122008	5202887
CDSN_chr6_31110087_31125446	0/0	g0001	60	16	14	25	4	1	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0002	35	3	10	18	2	2	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/1	g0003	31	8	1	16	1	4	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0004	29	0	4	21	0	4	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	1/0	g0005	24	1	7	14	0	1	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0006	21	0	0	16	0	5	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0007	16	0	8	4	1	3	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0008	14	1	6	4	1	2	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0009	13	0	0	13	0	0	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0010	13	0	1	12	0	0	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0011	10	0	0	10	0	0	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0012	9	2	0	5	0	2	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0013	8	7	1	0	0	0	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0014	8	4	4	0	0	0	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0015	8	8	0	0	0	0	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0016	8	0	1	7	0	0	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0017	8	1	3	1	1	2	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0018	7	0	0	7	0	0	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0019	6	5	1	0	0	0	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0020	5	4	1	0	0	0	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0021	5	3	1	0	0	1	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0022	4	2	0	2	0	0	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0023	4	1	1	1	1	0	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0024	4	0	0	4	0	0	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0025	4	0	2	0	0	2	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0026	4	0	2	0	2	0	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0027	3	0	1	0	1	1	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0028	3	0	0	3	0	0	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0029	3	0	0	0	0	3	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0030	3	2	1	0	0	0	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0031	3	0	0	3	0	0	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0032	3	1	2	0	0	0	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0033	2	0	0	0	0	2	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0034	2	1	1	0	0	0	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0035	2	2	0	0	0	0	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0036	2	0	0	0	0	2	CDSN	chr6	31110087	31125446