JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDSN_chr6_31110087_31125446	0/0	g0087	1	1	0	0	0	0	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0088	1	0	0	1	0	0	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0089	1	0	0	0	1	0	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	g0090	1	1	0	0	0	0	CDSN	chr6	31110087	31125446
CDT1_chr16_88798789_88814258	1/1	g0001	349	41	70	185	16	35	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	g0002	10	0	0	10	0	0	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	g0003	9	8	1	0	0	0	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	g0004	8	5	1	0	0	2	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	g0005	8	7	1	0	0	0	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	g0006	7	0	2	0	1	4	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	g0007	6	6	0	0	0	0	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	g0008	5	5	0	0	0	0	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	g0009	4	4	0	0	0	0	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	g0010	4	4	0	0	0	0	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	g0011	3	2	1	0	0	0	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	g0012	3	0	2	0	1	0	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	g0013	3	3	0	0	0	0	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	g0014	2	0	0	2	0	0	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	g0015	2	2	0	0	0	0	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	g0016	2	0	0	2	0	0	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	g0017	2	2	0	0	0	0	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	g0018	2	0	2	0	0	0	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	g0019	1	1	0	0	0	0	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	g0020	1	1	0	0	0	0	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	g0021	1	0	0	1	0	0	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	g0022	1	0	0	1	0	0	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	g0023	1	0	0	0	0	1	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	g0024	1	0	1	0	0	0	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	g0025	1	0	1	0	0	0	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	g0026	1	1	0	0	0	0	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	g0027	1	0	1	0	0	0	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	g0028	1	0	1	0	0	0	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	g0029	1	0	1	0	0	0	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	g0030	1	0	1	0	0	0	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	g0031	1	0	0	1	0	0	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	g0032	1	0	0	1	0	0	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	g0033	1	0	0	1	0	0	CDT1	chr16	88798789	88814258
CDV3_chr3_133568686_133595261	0/0	g0001	61	12	8	37	1	3	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0002	34	0	5	23	4	2	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0003	25	0	6	14	1	4	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0004	17	0	9	5	0	3	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0005	9	0	8	1	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0006	9	0	2	6	0	1	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0007	6	0	2	0	4	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0008	6	6	0	0	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0009	6	6	0	0	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0010	6	0	0	6	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0011	5	0	3	0	2	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0012	4	0	2	1	1	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0013	4	0	0	2	0	2	CDV3	chr3	133568686	133595261