JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDV3_chr3_133568686_133595261	0/0	g0114	1	1	0	0	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0115	1	1	0	0	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0116	1	1	0	0	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0117	1	1	0	0	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0118	1	1	0	0	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0119	1	0	1	0	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0120	1	1	0	0	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0121	1	0	0	1	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0122	1	0	0	1	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0123	1	0	0	1	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0124	1	0	0	1	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0125	1	0	0	1	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0126	1	0	0	1	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0127	1	0	0	0	1	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0128	1	0	0	1	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0129	1	0	0	0	0	1	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0130	1	0	0	0	0	1	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0131	1	0	0	0	0	1	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0132	1	0	0	1	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0133	1	0	0	1	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0134	1	0	1	0	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0135	1	0	0	0	0	1	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0136	1	0	0	1	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0137	1	0	0	1	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0138	1	0	0	1	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0139	1	0	0	1	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0140	1	0	1	0	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0141	1	0	1	0	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0142	1	0	0	1	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0143	1	0	1	0	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0144	1	0	0	1	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0145	1	0	0	0	0	1	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0146	1	0	0	1	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0147	1	0	0	0	0	1	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0148	1	1	0	0	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0149	1	0	0	1	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0150	1	0	0	1	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0151	1	0	0	1	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0152	1	1	0	0	0	0	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	g0153	1	0	1	0	0	0	CDV3	chr3	133568686	133595261
CDX1_chr5_150161778_150189558	0/0	g0001	86	5	17	43	9	12	CDX1	chr5	150161778	150189558
CDX1_chr5_150161778_150189558	0/0	g0002	75	6	12	44	4	9	CDX1	chr5	150161778	150189558
CDX1_chr5_150161778_150189558	0/0	g0003	26	1	7	15	1	2	CDX1	chr5	150161778	150189558
CDX1_chr5_150161778_150189558	0/0	g0004	20	0	0	19	0	1	CDX1	chr5	150161778	150189558
CDX1_chr5_150161778_150189558	0/0	g0005	10	0	7	3	0	0	CDX1	chr5	150161778	150189558
CDX1_chr5_150161778_150189558	0/0	g0006	8	0	0	8	0	0	CDX1	chr5	150161778	150189558
CDX1_chr5_150161778_150189558	0/0	g0007	8	7	1	0	0	0	CDX1	chr5	150161778	150189558
CDX1_chr5_150161778_150189558	0/0	g0008	8	8	0	0	0	0	CDX1	chr5	150161778	150189558
CDX1_chr5_150161778_150189558	0/0	g0009	7	7	0	0	0	0	CDX1	chr5	150161778	150189558
CDX1_chr5_150161778_150189558	0/0	g0010	7	2	4	0	1	0	CDX1	chr5	150161778	150189558