JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CDX1_chr5_150161778_150189558	0/0	g0111	1	0	0	0	0	1	CDX1	chr5	150161778	150189558
CDX1_chr5_150161778_150189558	0/0	g0112	1	0	1	0	0	0	CDX1	chr5	150161778	150189558
CDX1_chr5_150161778_150189558	0/0	g0113	1	0	0	0	0	1	CDX1	chr5	150161778	150189558
CDX1_chr5_150161778_150189558	0/0	g0114	1	0	0	1	0	0	CDX1	chr5	150161778	150189558
CDX1_chr5_150161778_150189558	0/0	g0115	1	1	0	0	0	0	CDX1	chr5	150161778	150189558
CDX2_chr13_27955918_27974315	0/1	g0001	95	17	16	35	10	16	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0002	88	4	24	53	2	5	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	1/0	g0003	42	13	7	14	1	6	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0004	18	0	0	18	0	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0005	17	17	0	0	0	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0006	14	0	1	13	0	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0007	9	0	0	9	0	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0008	8	0	2	4	2	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0009	6	4	2	0	0	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0010	6	1	3	0	1	1	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0011	5	1	0	0	1	3	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0012	4	0	3	1	0	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0013	4	0	0	4	0	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0014	4	3	1	0	0	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0015	3	0	3	0	0	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0016	3	0	2	0	0	1	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0017	3	0	0	3	0	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0018	3	1	1	1	0	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0019	3	1	2	0	0	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0020	3	0	0	3	0	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0021	3	1	2	0	0	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0022	3	3	0	0	0	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0023	2	0	0	2	0	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0024	2	0	0	2	0	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0025	2	0	0	2	0	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0026	2	0	0	2	0	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0027	2	2	0	0	0	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0028	2	0	0	2	0	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0029	2	2	0	0	0	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0030	2	2	0	0	0	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0031	1	0	1	0	0	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0032	1	0	0	1	0	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0033	1	0	0	1	0	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0034	1	0	0	1	0	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0035	1	0	0	1	0	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0036	1	0	0	1	0	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0037	1	0	0	1	0	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0038	1	0	0	1	0	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0039	1	1	0	0	0	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0040	1	0	0	1	0	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0041	1	1	0	0	0	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0042	1	0	0	0	0	1	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0043	1	0	0	0	0	1	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0044	1	0	1	0	0	0	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	g0045	1	0	1	0	0	0	CDX2	chr13	27955918	27974315