JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CEACAM16_chr19_44694151_44715718	0/0	g0153	1	0	1	0	0	0	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	g0154	1	1	0	0	0	0	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	g0155	1	1	0	0	0	0	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	g0156	1	1	0	0	0	0	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	g0157	1	1	0	0	0	0	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	g0158	1	0	1	0	0	0	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	g0159	1	0	1	0	0	0	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	g0160	1	0	1	0	0	0	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	g0161	1	0	0	1	0	0	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	g0162	1	0	0	1	0	0	CEACAM16	chr19	44694151	44715718
CEACAM18_chr19_51473539_51496301	1/1	g0001	188	25	46	100	4	11	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0002	25	0	1	15	2	7	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0003	20	0	1	12	3	4	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0004	12	12	0	0	0	0	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0005	11	0	0	11	0	0	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0006	11	1	3	1	0	6	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0007	10	9	1	0	0	0	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0008	6	0	2	0	3	1	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0009	6	0	0	6	0	0	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0010	5	0	0	5	0	0	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0011	4	0	4	0	0	0	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0012	4	4	0	0	0	0	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0013	4	4	0	0	0	0	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0014	3	0	0	0	0	3	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0015	3	0	2	0	1	0	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0016	3	0	1	1	0	1	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0017	3	0	1	0	2	0	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0018	3	0	0	3	0	0	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0019	3	3	0	0	0	0	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0020	2	0	0	2	0	0	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0021	2	0	0	0	0	2	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0022	2	2	0	0	0	0	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0023	2	0	0	2	0	0	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0024	2	1	0	1	0	0	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0025	2	0	0	0	0	2	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0026	2	0	0	0	1	1	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0027	2	0	1	0	1	0	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0028	2	0	2	0	0	0	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0029	2	0	0	2	0	0	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0030	2	2	0	0	0	0	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0031	2	2	0	0	0	0	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0032	2	2	0	0	0	0	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0033	2	0	0	2	0	0	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0034	2	0	0	1	0	1	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0035	1	1	0	0	0	0	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0036	1	0	0	1	0	0	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0037	1	1	0	0	0	0	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0038	1	1	0	0	0	0	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0039	1	0	0	1	0	0	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	g0040	1	0	1	0	0	0	CEACAM18	chr19	51473539	51496301