JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CEACAM19_chr19_44666482_44689355	0/0	g0141	1	0	1	0	0	0	CEACAM19	chr19	44666482	44689355
CEACAM19_chr19_44666482_44689355	0/0	g0142	1	0	0	1	0	0	CEACAM19	chr19	44666482	44689355
CEACAM19_chr19_44666482_44689355	0/0	g0143	1	0	0	1	0	0	CEACAM19	chr19	44666482	44689355
CEACAM19_chr19_44666482_44689355	0/0	g0144	1	0	0	0	0	1	CEACAM19	chr19	44666482	44689355
CEACAM19_chr19_44666482_44689355	0/0	g0145	1	0	0	0	1	0	CEACAM19	chr19	44666482	44689355
CEACAM19_chr19_44666482_44689355	0/0	g0146	1	0	1	0	0	0	CEACAM19	chr19	44666482	44689355
CEACAM19_chr19_44666482_44689355	0/0	g0147	1	0	0	1	0	0	CEACAM19	chr19	44666482	44689355
CEACAM19_chr19_44666482_44689355	0/0	g0148	1	0	0	0	0	1	CEACAM19	chr19	44666482	44689355
CEACAM19_chr19_44666482_44689355	0/0	g0149	1	1	0	0	0	0	CEACAM19	chr19	44666482	44689355
CEACAM19_chr19_44666482_44689355	0/0	g0150	1	1	0	0	0	0	CEACAM19	chr19	44666482	44689355
CEACAM1_chr19_42502306_42533481	0/0	g0001	18	3	2	8	0	5	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0002	13	1	11	1	0	0	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0003	9	0	6	0	1	2	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0004	8	0	5	3	0	0	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	1/0	g0005	7	0	4	1	0	1	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0006	5	4	0	0	0	1	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0007	5	3	1	0	0	1	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0008	4	4	0	0	0	0	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0009	4	0	2	0	2	0	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0010	3	1	0	0	2	0	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0011	3	3	0	0	0	0	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0012	3	0	1	2	0	0	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0013	3	0	0	3	0	0	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0014	3	0	0	3	0	0	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0015	3	0	0	3	0	0	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0016	3	1	2	0	0	0	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0017	3	0	3	0	0	0	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0018	3	3	0	0	0	0	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0019	3	2	1	0	0	0	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0020	2	2	0	0	0	0	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0021	2	0	0	2	0	0	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0022	2	0	1	0	0	1	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0023	2	0	1	0	0	1	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0024	2	0	1	0	1	0	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0025	2	2	0	0	0	0	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0026	2	1	1	0	0	0	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0027	2	0	1	0	1	0	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0028	2	0	0	2	0	0	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0029	2	0	0	2	0	0	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0030	2	0	2	0	0	0	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0031	2	2	0	0	0	0	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0032	2	0	0	0	1	1	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0033	2	0	0	2	0	0	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0034	2	2	0	0	0	0	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0035	1	0	1	0	0	0	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0036	1	1	0	0	0	0	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0037	1	0	0	1	0	0	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0038	1	0	1	0	0	0	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0039	1	1	0	0	0	0	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	g0040	1	0	0	0	1	0	CEACAM1	chr19	42502306	42533481