JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CEACAM20_chr19_44501159_44534675	0/0	g0400	1	0	0	1	0	0	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	g0401	1	0	0	1	0	0	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	g0402	1	0	1	0	0	0	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	g0403	1	0	0	0	0	1	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	g0404	1	0	1	0	0	0	CEACAM20	chr19	44501159	44534675
CEACAM21_chr19_41571166_41591844	0/1	g0001	106	3	23	52	7	20	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0002	54	0	2	47	0	5	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0003	41	19	7	8	1	6	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0004	22	0	2	19	1	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0005	11	0	0	11	0	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0006	10	10	0	0	0	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0007	8	8	0	0	0	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0008	7	5	2	0	0	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0009	6	0	0	6	0	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0010	6	2	0	4	0	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0011	6	0	2	0	2	2	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0012	4	0	0	4	0	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0013	4	4	0	0	0	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0014	4	0	3	0	1	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0015	3	0	1	0	1	1	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0016	3	3	0	0	0	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0017	3	0	0	3	0	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0018	3	0	2	0	1	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0019	3	3	0	0	0	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0020	3	0	0	3	0	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0021	3	0	0	3	0	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0022	3	0	0	0	0	3	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0023	3	3	0	0	0	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0024	2	0	0	2	0	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0025	2	2	0	0	0	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0026	2	2	0	0	0	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0027	2	0	0	1	0	1	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0028	2	2	0	0	0	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0029	2	0	2	0	0	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0030	2	0	2	0	0	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0031	2	0	2	0	0	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0032	2	0	0	1	0	1	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0033	2	1	0	1	0	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0034	2	1	1	0	0	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0035	2	2	0	0	0	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0036	2	2	0	0	0	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0037	1	0	1	0	0	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0038	1	1	0	0	0	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0039	1	0	0	1	0	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0040	1	1	0	0	0	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0041	1	1	0	0	0	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0042	1	1	0	0	0	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0043	1	1	0	0	0	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0044	1	1	0	0	0	0	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	g0045	1	1	0	0	0	0	CEACAM21	chr19	41571166	41591844