JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CEACAM4_chr19_41614015_41632074	0/0	g0245	1	0	1	0	0	0	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	g0246	1	1	0	0	0	0	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	g0247	1	0	1	0	0	0	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	g0248	1	1	0	0	0	0	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	g0249	1	1	0	0	0	0	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	g0250	1	0	0	0	0	1	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	g0251	1	0	0	0	0	1	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	g0252	1	0	1	0	0	0	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	g0253	1	0	1	0	0	0	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	g0254	1	1	0	0	0	0	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	g0255	1	1	0	0	0	0	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	g0256	1	1	0	0	0	0	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	g0257	1	1	0	0	0	0	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	g0258	1	0	1	0	0	0	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	g0259	1	1	0	0	0	0	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	g0260	1	1	0	0	0	0	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	g0261	1	1	0	0	0	0	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	g0262	1	1	0	0	0	0	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	g0263	1	1	0	0	0	0	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	g0264	1	1	0	0	0	0	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	g0265	1	1	0	0	0	0	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	g0266	1	1	0	0	0	0	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	g0267	1	1	0	0	0	0	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	g0268	1	1	0	0	0	0	CEACAM4	chr19	41614015	41632074
CEACAM5_chr19_41703626_41735433	0/0	g0001	49	0	1	40	0	8	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	g0002	19	0	0	18	1	0	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	g0003	18	0	12	3	1	2	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	g0004	17	0	1	13	1	2	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/1	g0005	12	0	4	2	4	1	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	g0006	12	0	9	0	2	1	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	g0007	8	2	2	0	2	2	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	g0008	7	0	0	7	0	0	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	g0009	5	0	0	5	0	0	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	g0010	5	5	0	0	0	0	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	g0011	5	4	1	0	0	0	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	g0012	5	1	1	0	1	2	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	g0013	4	3	1	0	0	0	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	g0014	3	0	2	0	0	1	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	g0015	3	0	0	3	0	0	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	g0016	3	0	2	0	0	1	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	g0017	3	3	0	0	0	0	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	g0018	3	0	3	0	0	0	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	g0019	3	0	0	2	0	1	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	g0020	3	3	0	0	0	0	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	g0021	3	0	0	0	0	3	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	g0022	2	0	1	0	0	1	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	g0023	2	2	0	0	0	0	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	g0024	2	0	1	1	0	0	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	g0025	2	0	0	2	0	0	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	g0026	2	0	2	0	0	0	CEACAM5	chr19	41703626	41735433