JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CEACAM5_chr19_41703626_41735433	0/0	g0177	1	0	0	1	0	0	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	g0178	1	0	1	0	0	0	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	g0179	1	0	0	0	0	1	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	g0180	1	0	1	0	0	0	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	g0181	1	0	0	1	0	0	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	g0182	1	0	0	1	0	0	CEACAM5	chr19	41703626	41735433
CEACAM6_chr19_41750530_41777211	0/0	g0001	37	0	0	35	0	2	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0002	28	14	8	2	0	4	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0003	22	0	5	12	3	2	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0004	14	0	0	14	0	0	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0005	13	2	1	6	1	3	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/1	g0006	12	1	5	3	0	2	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0007	11	0	11	0	0	0	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0008	11	0	1	8	0	2	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0009	9	0	0	9	0	0	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0010	9	4	0	4	0	1	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0011	9	0	0	8	0	1	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0012	7	0	0	7	0	0	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0013	6	2	2	2	0	0	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0014	6	0	0	6	0	0	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0015	5	0	2	0	0	3	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0016	5	0	4	1	0	0	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0017	5	0	4	0	0	1	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0018	5	4	1	0	0	0	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0019	4	3	0	1	0	0	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0020	4	0	0	4	0	0	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0021	4	0	0	3	1	0	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0022	4	4	0	0	0	0	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0023	3	3	0	0	0	0	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0024	3	0	0	2	0	1	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	1/0	g0025	3	0	1	0	0	1	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0026	3	0	2	0	1	0	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0027	3	3	0	0	0	0	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0028	2	0	2	0	0	0	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0029	2	0	0	2	0	0	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0030	2	0	2	0	0	0	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0031	2	0	0	2	0	0	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0032	2	0	0	2	0	0	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0033	2	2	0	0	0	0	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0034	2	0	0	1	0	1	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0035	2	0	0	1	0	1	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0036	2	2	0	0	0	0	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0037	2	0	1	0	1	0	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0038	2	1	1	0	0	0	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0039	2	0	2	0	0	0	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0040	2	0	0	2	0	0	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0041	2	0	0	2	0	0	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0042	2	0	0	0	2	0	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0043	2	0	0	2	0	0	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	g0044	2	0	0	2	0	0	CEACAM6	chr19	41750530	41777211