JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CEACAM7_chr19_41668303_41693270	0/0	g0157	1	0	0	1	0	0	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	g0158	1	0	0	0	0	1	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	g0159	1	0	0	0	0	1	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	g0160	1	0	0	1	0	0	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	g0161	1	0	1	0	0	0	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	g0162	1	1	0	0	0	0	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	g0163	1	0	1	0	0	0	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	g0164	1	1	0	0	0	0	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	g0165	1	1	0	0	0	0	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	g0166	1	1	0	0	0	0	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	g0167	1	0	1	0	0	0	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	g0168	1	0	1	0	0	0	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	g0169	1	0	1	0	0	0	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	g0170	1	1	0	0	0	0	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	g0171	1	1	0	0	0	0	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	g0172	1	0	1	0	0	0	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	g0173	1	0	1	0	0	0	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	g0174	1	0	1	0	0	0	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	g0175	1	0	1	0	0	0	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	g0176	1	1	0	0	0	0	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	g0177	1	1	0	0	0	0	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	g0178	1	1	0	0	0	0	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	g0179	1	1	0	0	0	0	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	g0180	1	0	0	1	0	0	CEACAM7	chr19	41668303	41693270
CEACAM8_chr19_42575243_42599924	1/0	g0001	8	2	2	3	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0002	7	7	0	0	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0003	7	0	2	2	2	1	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0004	7	0	2	3	1	1	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0005	6	0	1	3	1	1	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0006	6	0	4	2	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0007	6	0	3	2	0	1	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0008	5	0	5	0	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0009	5	1	0	4	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0010	5	0	5	0	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0011	4	3	1	0	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0012	4	0	0	2	1	1	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0013	4	0	0	2	2	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0014	4	4	0	0	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0015	3	0	1	0	1	1	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0016	3	0	0	3	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0017	3	0	2	1	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0018	3	0	0	0	1	2	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0019	3	2	1	0	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0020	2	2	0	0	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0021	2	0	1	0	1	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0022	2	0	2	0	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0023	2	0	1	0	0	1	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0024	2	0	0	0	0	2	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0025	2	1	0	1	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0026	2	0	0	1	1	0	CEACAM8	chr19	42575243	42599924