JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CEACAM8_chr19_42575243_42599924	0/0	g0177	1	0	0	0	0	1	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0178	1	1	0	0	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0179	1	0	1	0	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0180	1	0	0	1	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0181	1	0	1	0	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0182	1	0	1	0	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0183	1	0	0	1	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0184	1	1	0	0	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0185	1	1	0	0	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0186	1	1	0	0	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0187	1	1	0	0	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0188	1	0	0	0	0	1	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0189	1	0	0	0	0	1	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0190	1	0	0	1	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0191	1	0	0	0	1	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0192	1	0	0	0	0	1	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0193	1	1	0	0	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0194	1	0	1	0	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0195	1	0	1	0	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0196	1	0	0	1	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0197	1	0	0	0	0	1	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0198	1	0	0	0	0	1	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0199	1	0	1	0	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0200	1	1	0	0	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0201	1	0	0	1	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0202	1	0	0	1	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0203	1	1	0	0	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0204	1	1	0	0	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0205	1	1	0	0	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0206	1	1	0	0	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0207	1	1	0	0	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0208	1	1	0	0	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0209	1	1	0	0	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0210	1	1	0	0	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0211	1	1	0	0	0	0	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	g0212	1	1	0	0	0	0	CEACAM8	chr19	42575243	42599924
CEBPA_chr19_33294934_33307534	1/1	g0000	450	98	78	204	18	50	CEBPA	chr19	33294934	33307534
CEBPB_chr20_50185830_50197668	1/1	g0000	384	92	80	150	16	44	CEBPB	chr20	50185830	50197668
CEBPD_chr8_47731913_47743164	1/1	g0000	316	90	58	116	14	36	CEBPD	chr8	47731913	47743164
CEBPE_chr14_23112306_23124255	1/0	g0001	297	55	57	135	11	38	CEBPE	chr14	23112306	23124255
CEBPE_chr14_23112306_23124255	0/1	g0002	98	20	10	60	0	7	CEBPE	chr14	23112306	23124255
CEBPE_chr14_23112306_23124255	0/0	g0003	29	1	4	21	1	2	CEBPE	chr14	23112306	23124255
CEBPE_chr14_23112306_23124255	0/0	g0004	7	7	0	0	0	0	CEBPE	chr14	23112306	23124255
CEBPE_chr14_23112306_23124255	0/0	g0005	5	4	1	0	0	0	CEBPE	chr14	23112306	23124255
CEBPE_chr14_23112306_23124255	0/0	g0006	3	2	1	0	0	0	CEBPE	chr14	23112306	23124255
CEBPE_chr14_23112306_23124255	0/0	g0007	3	0	3	0	0	0	CEBPE	chr14	23112306	23124255
CEBPE_chr14_23112306_23124255	0/0	g0008	2	0	0	2	0	0	CEBPE	chr14	23112306	23124255
CEBPE_chr14_23112306_23124255	0/0	g0009	2	2	0	0	0	0	CEBPE	chr14	23112306	23124255
CEBPE_chr14_23112306_23124255	0/0	g0010	1	0	0	1	0	0	CEBPE	chr14	23112306	23124255
CEBPE_chr14_23112306_23124255	0/0	g0011	1	1	0	0	0	0	CEBPE	chr14	23112306	23124255