JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CEMIP_chr15_80774370_80956771	0/0	g0245	1	1	0	0	0	0	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	g0246	1	1	0	0	0	0	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	g0247	1	1	0	0	0	0	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	g0248	1	1	0	0	0	0	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	g0249	1	1	0	0	0	0	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	g0250	1	1	0	0	0	0	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	g0251	1	1	0	0	0	0	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	g0252	1	1	0	0	0	0	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	g0253	1	1	0	0	0	0	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	g0254	1	1	0	0	0	0	CEMIP	chr15	80774370	80956771
CEMP1_chr16_2525035_2536408	1/1	g0000	348	90	68	144	8	36	CEMP1	chr16	2525035	2536408
CENATAC_chr11_118993138_119020793	0/0	g0001	40	5	10	22	2	1	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/1	g0002	18	0	9	7	1	0	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0003	14	0	2	9	2	1	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0004	8	3	1	2	0	2	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0005	6	0	3	3	0	0	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0006	5	1	0	2	0	2	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0007	4	4	0	0	0	0	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0008	4	0	0	3	0	1	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0009	4	0	0	4	0	0	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0010	4	0	2	0	2	0	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0011	4	4	0	0	0	0	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0012	3	0	2	1	0	0	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0013	3	0	0	3	0	0	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0014	3	0	0	3	0	0	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0015	3	0	3	0	0	0	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0016	3	3	0	0	0	0	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0017	3	3	0	0	0	0	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0018	3	2	1	0	0	0	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0019	3	3	0	0	0	0	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0020	2	0	2	0	0	0	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0021	2	0	0	2	0	0	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0022	2	2	0	0	0	0	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0023	2	1	0	0	0	1	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0024	2	2	0	0	0	0	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0025	2	0	2	0	0	0	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0026	2	0	2	0	0	0	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0027	2	0	0	2	0	0	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0028	2	0	0	2	0	0	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0029	2	0	1	0	0	1	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0030	2	0	2	0	0	0	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0031	2	2	0	0	0	0	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0032	2	2	0	0	0	0	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0033	2	2	0	0	0	0	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0034	1	0	1	0	0	0	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0035	1	0	1	0	0	0	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0036	1	0	1	0	0	0	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0037	1	0	1	0	0	0	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0038	1	0	1	0	0	0	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	g0039	1	0	0	0	0	1	CENATAC	chr11	118993138	119020793