JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CEND1_chr11_782115_795090	1/0	g0002	107	22	24	40	7	13	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0003	54	10	1	32	0	11	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0004	13	1	2	7	1	2	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0005	9	6	2	1	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0006	8	2	5	0	1	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0007	8	8	0	0	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0008	7	6	1	0	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0009	6	6	0	0	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0010	6	5	1	0	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0011	6	5	1	0	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0012	4	0	0	4	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0013	3	3	0	0	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0014	3	0	3	0	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0015	3	0	0	3	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0016	2	1	1	0	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0017	2	0	0	2	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0018	2	0	0	1	0	1	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0019	2	0	0	0	0	2	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0020	2	0	0	2	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0021	2	0	0	2	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0022	2	0	0	2	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0023	1	0	0	1	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0024	1	0	0	1	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0025	1	1	0	0	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0026	1	0	0	1	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0027	1	0	0	1	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0028	1	0	0	1	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0029	1	1	0	0	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0030	1	0	1	0	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0031	1	1	0	0	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0032	1	1	0	0	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0033	1	1	0	0	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0034	1	1	0	0	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0035	1	0	1	0	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0036	1	0	0	1	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0037	1	0	0	0	0	1	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0038	1	0	0	0	0	1	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0039	1	0	0	1	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0040	1	0	0	1	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0041	1	1	0	0	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0042	1	0	1	0	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0043	1	1	0	0	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0044	1	0	1	0	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0045	1	0	0	1	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0046	1	1	0	0	0	0	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	g0047	1	0	0	1	0	0	CEND1	chr11	782115	795090
CENPA_chr2_26781056_26799589	1/0	g0001	88	6	10	56	2	13	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/1	g0002	83	16	12	47	0	7	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0003	56	2	23	24	3	4	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0004	15	1	2	1	3	8	CENPA	chr2	26781056	26799589