JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CENPA_chr2_26781056_26799589	0/0	g0005	10	10	0	0	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0006	10	0	6	0	4	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0007	10	8	2	0	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0008	9	0	6	0	3	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0009	7	0	0	6	1	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0010	7	4	3	0	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0011	6	5	1	0	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0012	6	0	0	5	0	1	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0013	6	6	0	0	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0014	6	6	0	0	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0015	5	4	1	0	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0016	4	3	1	0	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0017	4	1	2	0	0	1	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0018	4	2	2	0	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0019	4	4	0	0	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0020	3	0	0	3	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0021	3	3	0	0	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0022	2	1	1	0	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0023	2	2	0	0	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0024	2	0	0	2	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0025	2	0	0	2	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0026	2	0	0	2	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0027	2	0	0	2	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0028	1	0	0	1	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0029	1	1	0	0	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0030	1	1	0	0	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0031	1	1	0	0	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0032	1	0	0	1	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0033	1	0	0	1	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0034	1	0	0	1	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0035	1	0	0	0	0	1	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0036	1	0	0	1	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0037	1	0	0	1	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0038	1	0	0	1	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0039	1	0	0	0	0	1	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0040	1	0	0	1	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0041	1	1	0	0	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0042	1	1	0	0	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0043	1	0	0	1	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0044	1	0	0	1	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0045	1	0	1	0	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0046	1	0	1	0	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0047	1	0	0	0	0	1	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0048	1	0	0	1	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0049	1	0	0	1	0	0	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0050	1	0	0	0	0	1	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	g0051	1	1	0	0	0	0	CENPA	chr2	26781056	26799589
CENPB_chr20_3778851_3791740	1/1	g0000	410	96	74	182	18	38	CENPB	chr20	3778851	3791740
CENPC_chr4_67463762_67550503	0/0	g0001	3	0	3	0	0	0	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	g0002	2	0	0	2	0	0	CENPC	chr4	67463762	67550503