JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ADAM19_chr5_157472304_157580775	0/0	g0263	1	1	0	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0264	1	1	0	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0265	1	1	0	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0266	1	1	0	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0267	1	0	1	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0268	1	0	1	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0269	1	0	1	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0270	1	1	0	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0271	1	1	0	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0272	1	0	1	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0273	1	1	0	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0274	1	1	0	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0275	1	1	0	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0276	1	1	0	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0277	1	1	0	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0278	1	1	0	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0279	1	1	0	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0280	1	1	0	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0281	1	1	0	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0282	1	1	0	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0283	1	1	0	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0284	1	0	0	1	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0285	1	1	0	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0286	1	1	0	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0287	1	1	0	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0288	1	0	0	0	0	1	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0289	1	0	1	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0290	1	1	0	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0291	1	1	0	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0292	1	1	0	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0293	1	1	0	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0294	1	0	1	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0295	1	1	0	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0296	1	1	0	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0297	1	0	1	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	1/0	g0298	1	0	0	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0299	1	1	0	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0300	1	1	0	0	0	0	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	g0301	1	1	0	0	0	0	ADAM19	chr5	157472304	157580775
ADAM20_chr14_70517358_70540004	1/0	g0001	82	4	15	49	4	9	ADAM20	chr14	70517358	70540004
ADAM20_chr14_70517358_70540004	0/0	g0002	55	1	7	41	1	5	ADAM20	chr14	70517358	70540004
ADAM20_chr14_70517358_70540004	0/0	g0003	32	2	9	15	0	6	ADAM20	chr14	70517358	70540004
ADAM20_chr14_70517358_70540004	0/0	g0004	21	0	1	19	0	1	ADAM20	chr14	70517358	70540004
ADAM20_chr14_70517358_70540004	0/1	g0005	19	0	12	0	4	2	ADAM20	chr14	70517358	70540004
ADAM20_chr14_70517358_70540004	0/0	g0006	18	7	3	7	1	0	ADAM20	chr14	70517358	70540004
ADAM20_chr14_70517358_70540004	0/0	g0007	11	8	2	0	0	1	ADAM20	chr14	70517358	70540004
ADAM20_chr14_70517358_70540004	0/0	g0008	9	9	0	0	0	0	ADAM20	chr14	70517358	70540004
ADAM20_chr14_70517358_70540004	0/0	g0009	6	1	2	3	0	0	ADAM20	chr14	70517358	70540004
ADAM20_chr14_70517358_70540004	0/0	g0010	6	0	1	5	0	0	ADAM20	chr14	70517358	70540004
ADAM20_chr14_70517358_70540004	0/0	g0011	5	0	0	5	0	0	ADAM20	chr14	70517358	70540004