JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CEP192_chr18_12986362_13130036	0/0	g0350	1	0	0	1	0	0	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	g0351	1	0	0	1	0	0	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	g0352	1	0	0	1	0	0	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	g0353	1	0	0	1	0	0	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	g0354	1	0	1	0	0	0	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	g0355	1	1	0	0	0	0	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	g0356	1	0	0	0	0	1	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	g0357	1	1	0	0	0	0	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	g0358	1	0	0	0	1	0	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	g0359	1	1	0	0	0	0	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	g0360	1	1	0	0	0	0	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	g0361	1	1	0	0	0	0	CEP192	chr18	12986362	13130036
CEP19_chr3_196701277_196717250	0/0	g0001	74	2	5	54	1	12	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	1/0	g0002	50	7	7	28	2	5	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0003	32	8	18	0	3	3	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0004	30	8	8	9	0	5	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0005	28	2	11	13	2	0	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0006	22	0	0	21	0	1	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0007	18	10	6	0	0	2	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0008	13	0	2	8	0	3	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0009	10	9	1	0	0	0	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0010	10	2	5	0	2	1	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0011	7	1	1	4	0	1	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0012	6	0	0	6	0	0	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0013	5	0	0	5	0	0	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0014	5	5	0	0	0	0	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0015	5	0	4	1	0	0	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0016	4	4	0	0	0	0	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0017	4	2	0	2	0	0	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0018	4	4	0	0	0	0	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0019	4	4	0	0	0	0	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0020	4	0	1	0	1	2	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/1	g0021	4	0	1	0	0	2	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0022	4	0	1	3	0	0	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0023	3	1	0	0	1	1	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0024	3	0	0	3	0	0	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0025	3	0	2	0	1	0	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0026	3	3	0	0	0	0	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0027	3	3	0	0	0	0	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0028	2	1	1	0	0	0	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0029	2	2	0	0	0	0	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0030	2	0	0	2	0	0	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0031	2	0	0	0	1	1	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0032	2	0	0	0	2	0	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0033	2	0	0	2	0	0	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0034	2	0	2	0	0	0	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0035	2	0	0	2	0	0	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0036	2	2	0	0	0	0	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0037	2	2	0	0	0	0	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0038	1	0	1	0	0	0	CEP19	chr3	196701277	196717250