JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CEP19_chr3_196701277_196717250	0/0	g0089	1	0	0	1	0	0	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0090	1	0	0	1	0	0	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	g0091	1	1	0	0	0	0	CEP19	chr3	196701277	196717250
CEP20_chr16_15860719_15893603	0/0	g0001	24	0	9	12	1	2	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0002	19	0	13	1	2	3	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0003	17	2	4	4	3	4	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0004	16	0	1	14	0	1	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0005	11	9	2	0	0	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0006	10	0	2	8	0	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0007	9	0	9	0	0	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0008	8	0	0	8	0	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0009	8	0	4	4	0	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0010	7	0	3	4	0	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0011	7	0	0	2	0	5	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0012	6	0	3	0	3	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0013	6	0	0	6	0	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0014	6	0	0	6	0	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0015	4	0	0	4	0	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0016	4	4	0	0	0	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0017	4	4	0	0	0	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0018	3	0	0	0	2	1	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0019	3	0	0	3	0	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0020	3	0	0	3	0	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0021	3	0	0	3	0	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0022	3	1	0	1	0	1	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0023	3	0	0	3	0	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0024	3	0	0	3	0	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0025	3	3	0	0	0	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0026	3	3	0	0	0	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0027	2	2	0	0	0	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0028	2	2	0	0	0	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0029	2	2	0	0	0	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0030	2	0	0	0	0	2	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0031	2	0	2	0	0	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0032	2	0	0	1	0	1	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0033	2	0	0	2	0	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0034	2	0	0	2	0	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0035	2	0	0	2	0	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0036	2	0	0	1	0	1	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0037	2	2	0	0	0	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0038	2	0	0	2	0	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0039	2	0	0	0	2	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0040	2	0	2	0	0	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0041	2	0	0	2	0	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0042	2	0	0	2	0	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0043	2	0	0	2	0	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0044	2	0	2	0	0	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0045	2	0	0	2	0	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0046	2	1	1	0	0	0	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	g0047	2	2	0	0	0	0	CEP20	chr16	15860719	15893603