JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CEP97_chr3_101719614_101775562	0/0	g0307	1	1	0	0	0	0	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	g0308	1	0	0	1	0	0	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	g0309	1	1	0	0	0	0	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	g0310	1	0	0	1	0	0	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	g0311	1	0	0	1	0	0	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	g0312	1	1	0	0	0	0	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	g0313	1	0	0	1	0	0	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	g0314	1	0	1	0	0	0	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	g0315	1	1	0	0	0	0	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	g0316	1	1	0	0	0	0	CEP97	chr3	101719614	101775562
CEPT1_chr1_111135223_111190104	0/0	g0001	13	0	1	12	0	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0002	11	0	4	5	0	2	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0003	6	0	0	6	0	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	1/0	g0004	6	0	2	2	0	1	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0005	5	3	1	1	0	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0006	5	0	3	1	1	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0007	4	0	0	4	0	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0008	4	0	0	4	0	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0009	4	4	0	0	0	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0010	3	0	3	0	0	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0011	3	0	0	3	0	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0012	3	0	0	2	0	1	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0013	3	1	2	0	0	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0014	3	0	0	1	0	2	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0015	3	1	2	0	0	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0016	3	0	1	0	0	2	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0017	3	3	0	0	0	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0018	3	1	1	0	0	1	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0019	3	0	2	0	1	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0020	3	0	0	3	0	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0021	3	3	0	0	0	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0022	3	0	0	3	0	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0023	2	1	1	0	0	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0024	2	0	0	2	0	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0025	2	0	0	2	0	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0026	2	0	0	2	0	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0027	2	0	2	0	0	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0028	2	0	1	0	0	1	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0029	2	0	0	2	0	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0030	2	2	0	0	0	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0031	2	0	1	1	0	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0032	2	0	0	2	0	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0033	2	2	0	0	0	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0034	2	0	1	1	0	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0035	2	0	2	0	0	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0036	2	0	0	0	2	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0037	2	0	0	2	0	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0038	2	0	0	2	0	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0039	2	0	1	0	0	1	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0040	2	0	1	0	1	0	CEPT1	chr1	111135223	111190104