JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CEPT1_chr1_111135223_111190104	0/0	g0291	1	1	0	0	0	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0292	1	1	0	0	0	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0293	1	1	0	0	0	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0294	1	1	0	0	0	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0295	1	1	0	0	0	0	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	g0296	1	1	0	0	0	0	CEPT1	chr1	111135223	111190104
CER1_chr9_14714724_14727733	1/0	g0001	293	15	57	180	8	32	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0002	36	31	5	0	0	0	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/1	g0003	25	9	8	2	0	5	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0004	18	2	0	16	0	0	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0005	11	0	5	0	4	2	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0006	9	0	6	0	1	2	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0007	6	6	0	0	0	0	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0008	6	6	0	0	0	0	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0009	5	5	0	0	0	0	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0010	4	4	0	0	0	0	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0011	3	0	0	3	0	0	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0012	3	0	0	3	0	0	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0013	3	0	0	3	0	0	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0014	3	3	0	0	0	0	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0015	2	0	0	0	2	0	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0016	2	2	0	0	0	0	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0017	2	0	0	0	0	2	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0018	2	2	0	0	0	0	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0019	2	1	1	0	0	0	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0020	2	1	1	0	0	0	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0021	1	0	0	1	0	0	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0022	1	1	0	0	0	0	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0023	1	0	1	0	0	0	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0024	1	0	0	0	0	1	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0025	1	0	1	0	0	0	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0026	1	0	0	1	0	0	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0027	1	0	0	1	0	0	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0028	1	0	0	1	0	0	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0029	1	1	0	0	0	0	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0030	1	1	0	0	0	0	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0031	1	0	1	0	0	0	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0032	1	1	0	0	0	0	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0033	1	1	0	0	0	0	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0034	1	1	0	0	0	0	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0035	1	1	0	0	0	0	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0036	1	1	0	0	0	0	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0037	1	0	0	0	0	1	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0038	1	0	0	1	0	0	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0039	1	0	1	0	0	0	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0040	1	1	0	0	0	0	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0041	1	0	1	0	0	0	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0042	1	0	0	0	1	0	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	g0043	1	0	0	0	0	1	CER1	chr9	14714724	14727733
CERCAM_chr9_128415857_128442347	0/0	g0001	45	3	18	17	2	5	CERCAM	chr9	128415857	128442347