JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CERS1_chr19_18863545_18901158	0/0	g0310	1	1	0	0	0	0	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	g0311	1	1	0	0	0	0	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	g0312	1	0	0	1	0	0	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	g0313	1	0	0	1	0	0	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	g0314	1	0	0	1	0	0	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	g0315	1	1	0	0	0	0	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	g0316	1	1	0	0	0	0	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	g0317	1	1	0	0	0	0	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	g0318	1	0	0	0	1	0	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	g0319	1	0	0	0	1	0	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	g0320	1	0	0	1	0	0	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	g0321	1	0	1	0	0	0	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	g0322	1	0	0	0	1	0	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	g0323	1	0	1	0	0	0	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	g0324	1	0	0	1	0	0	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	g0325	1	0	0	0	0	1	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	g0326	1	1	0	0	0	0	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	g0327	1	0	1	0	0	0	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	g0328	1	0	1	0	0	0	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	g0329	1	0	0	0	0	1	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	g0330	1	0	0	0	0	1	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	g0331	1	1	0	0	0	0	CERS1	chr19	18863545	18901158
CERS2_chr1_150960186_150979835	0/1	g0001	64	2	18	31	2	10	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	g0002	42	0	14	20	2	6	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	g0003	29	10	2	14	2	1	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	g0004	25	0	9	16	0	0	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	g0005	17	2	6	8	1	0	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	g0006	11	11	0	0	0	0	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	g0007	11	0	0	11	0	0	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	g0008	11	0	1	5	3	2	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	g0009	9	0	4	0	2	3	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	g0010	7	7	0	0	0	0	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	g0011	7	7	0	0	0	0	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	g0012	7	0	0	7	0	0	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	g0013	5	5	0	0	0	0	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	g0014	5	0	0	4	0	1	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	g0015	5	0	0	4	0	1	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	g0016	4	0	2	2	0	0	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	g0017	4	3	1	0	0	0	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	g0018	4	4	0	0	0	0	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	g0019	4	0	3	0	1	0	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	g0020	4	0	0	4	0	0	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	g0021	4	1	0	3	0	0	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	g0022	3	3	0	0	0	0	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	g0023	3	0	0	2	1	0	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	g0024	3	3	0	0	0	0	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	g0025	3	3	0	0	0	0	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	g0026	3	3	0	0	0	0	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	g0027	3	3	0	0	0	0	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	g0028	2	0	0	0	0	2	CERS2	chr1	150960186	150979835