JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CERT1_chr5_75372775_75516629	0/0	g0312	1	1	0	0	0	0	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	g0313	1	1	0	0	0	0	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	g0314	1	1	0	0	0	0	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	g0315	1	1	0	0	0	0	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	g0316	1	1	0	0	0	0	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	g0317	1	1	0	0	0	0	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	g0318	1	1	0	0	0	0	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	g0319	1	1	0	0	0	0	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	g0320	1	1	0	0	0	0	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	g0321	1	0	1	0	0	0	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	g0322	1	1	0	0	0	0	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	g0323	1	0	0	1	0	0	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	g0324	1	0	0	1	0	0	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	g0325	1	0	0	1	0	0	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	g0326	1	0	0	1	0	0	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	g0327	1	0	0	1	0	0	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	g0328	1	0	0	1	0	0	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	g0329	1	1	0	0	0	0	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	g0330	1	1	0	0	0	0	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	g0331	1	0	1	0	0	0	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	g0332	1	0	1	0	0	0	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	g0333	1	1	0	0	0	0	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	g0334	1	0	1	0	0	0	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	g0335	1	1	0	0	0	0	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	g0336	1	0	0	1	0	0	CERT1	chr5	75372775	75516629
CES1_chr16_55797851_55838096	0/0	g0001	2	0	2	0	0	0	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	g0002	2	1	0	0	1	0	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	g0003	2	0	0	2	0	0	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	g0004	2	0	0	2	0	0	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	g0005	1	0	0	1	0	0	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	g0006	1	0	0	1	0	0	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	g0007	1	1	0	0	0	0	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	g0008	1	0	0	1	0	0	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	g0009	1	0	0	1	0	0	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	g0010	1	1	0	0	0	0	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	g0011	1	1	0	0	0	0	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	1/0	g0012	1	0	0	0	0	0	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	g0013	1	1	0	0	0	0	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	g0014	1	0	0	0	0	1	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	g0015	1	0	0	0	0	1	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	g0016	1	0	1	0	0	0	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	g0017	1	0	0	1	0	0	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	g0018	1	0	0	1	0	0	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	g0019	1	0	0	1	0	0	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	g0020	1	0	0	1	0	0	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	g0021	1	0	0	1	0	0	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	g0022	1	0	0	1	0	0	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	g0023	1	0	0	1	0	0	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	g0024	1	0	0	0	1	0	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	g0025	1	0	0	1	0	0	CES1	chr16	55797851	55838096