JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CES2_chr16_66930516_66950096	0/0	g0043	1	0	0	0	0	1	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	g0044	1	0	0	1	0	0	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	g0045	1	1	0	0	0	0	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	g0046	1	1	0	0	0	0	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	g0047	1	0	0	0	0	1	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	g0048	1	0	1	0	0	0	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	g0049	1	1	0	0	0	0	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	g0050	1	0	0	0	0	1	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	g0051	1	0	0	1	0	0	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	g0052	1	0	0	1	0	0	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	g0053	1	0	0	1	0	0	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	g0054	1	0	0	0	1	0	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	g0055	1	0	0	0	1	0	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	g0056	1	0	1	0	0	0	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	g0057	1	0	0	1	0	0	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	g0058	1	0	0	0	0	1	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	g0059	1	0	0	0	0	1	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	g0060	1	0	0	0	0	1	CES2	chr16	66930516	66950096
CES3_chr16_66956266_66980149	1/0	g0001	116	16	23	57	6	13	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	g0002	45	2	10	32	0	1	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	g0003	25	14	3	6	1	1	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/1	g0004	15	1	6	0	4	3	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	g0005	14	14	0	0	0	0	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	g0006	11	9	0	2	0	0	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	g0007	9	4	0	0	0	5	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	g0008	7	6	1	0	0	0	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	g0009	6	0	0	6	0	0	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	g0010	5	5	0	0	0	0	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	g0011	4	0	2	2	0	0	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	g0012	3	3	0	0	0	0	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	g0013	3	0	0	3	0	0	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	g0014	3	3	0	0	0	0	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	g0015	2	0	2	0	0	0	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	g0016	2	2	0	0	0	0	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	g0017	2	0	0	2	0	0	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	g0018	2	0	0	0	2	0	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	g0019	2	0	0	0	0	2	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	g0020	2	0	0	0	0	2	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	g0021	2	0	1	0	0	1	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	g0022	2	1	1	0	0	0	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	g0023	2	2	0	0	0	0	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	g0024	1	0	0	1	0	0	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	g0025	1	1	0	0	0	0	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	g0026	1	1	0	0	0	0	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	g0027	1	1	0	0	0	0	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	g0028	1	1	0	0	0	0	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	g0029	1	0	0	1	0	0	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	g0030	1	0	0	1	0	0	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	g0031	1	1	0	0	0	0	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	g0032	1	0	0	0	0	1	CES3	chr16	66956266	66980149