JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CES5A_chr16_55841154_55880373	0/0	g0380	1	0	0	1	0	0	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0381	1	0	0	0	0	1	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0382	1	0	1	0	0	0	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0383	1	0	1	0	0	0	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0384	1	1	0	0	0	0	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0385	1	0	1	0	0	0	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0386	1	0	0	1	0	0	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0387	1	0	0	1	0	0	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0388	1	0	0	1	0	0	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0389	1	0	1	0	0	0	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0390	1	0	0	1	0	0	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0391	1	0	0	1	0	0	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0392	1	0	0	0	0	1	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0393	1	0	0	1	0	0	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0394	1	0	0	1	0	0	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0395	1	0	0	1	0	0	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0396	1	0	0	1	0	0	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0397	1	0	0	1	0	0	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0398	1	0	1	0	0	0	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0399	1	0	1	0	0	0	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0400	1	0	0	0	0	1	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0401	1	0	0	1	0	0	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0402	1	0	0	1	0	0	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0403	1	0	0	1	0	0	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0404	1	0	0	1	0	0	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0405	1	0	0	1	0	0	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0406	1	0	0	1	0	0	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0407	1	0	0	1	0	0	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0408	1	0	0	1	0	0	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0409	1	0	0	1	0	0	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0410	1	0	0	1	0	0	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0411	1	0	0	1	0	0	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0412	1	0	0	1	0	0	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0413	1	0	0	1	0	0	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0414	1	0	0	1	0	0	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0415	1	0	0	1	0	0	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0416	1	0	0	1	0	0	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	g0417	1	0	0	1	0	0	CES5A	chr16	55841154	55880373
CETN1_chr18_575380_587114	1/1	g0000	422	98	74	188	16	44	CETN1	chr18	575380	587114
CETN2_chrX_152821994_152835757	1/1	g0001	158	18	24	94	4	16	CETN2	chrX	152821994	152835757
CETN2_chrX_152821994_152835757	0/0	g0002	50	5	20	13	5	7	CETN2	chrX	152821994	152835757
CETN2_chrX_152821994_152835757	0/0	g0003	37	6	3	22	0	6	CETN2	chrX	152821994	152835757
CETN2_chrX_152821994_152835757	0/0	g0004	34	23	1	9	0	1	CETN2	chrX	152821994	152835757
CETN2_chrX_152821994_152835757	0/0	g0005	6	6	0	0	0	0	CETN2	chrX	152821994	152835757
CETN2_chrX_152821994_152835757	0/0	g0006	6	0	0	6	0	0	CETN2	chrX	152821994	152835757
CETN2_chrX_152821994_152835757	0/0	g0007	5	5	0	0	0	0	CETN2	chrX	152821994	152835757
CETN2_chrX_152821994_152835757	0/0	g0008	3	2	1	0	0	0	CETN2	chrX	152821994	152835757
CETN2_chrX_152821994_152835757	0/0	g0009	3	2	0	1	0	0	CETN2	chrX	152821994	152835757
CETN2_chrX_152821994_152835757	0/0	g0010	2	0	0	0	0	2	CETN2	chrX	152821994	152835757
CETN2_chrX_152821994_152835757	0/0	g0011	2	2	0	0	0	0	CETN2	chrX	152821994	152835757