JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CFAP107_chr1_12741200_12768699	0/0	g0102	1	0	0	1	0	0	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	g0103	1	0	0	1	0	0	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	g0104	1	0	0	1	0	0	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	g0105	1	1	0	0	0	0	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	g0106	1	0	0	0	0	1	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/1	g0107	1	0	0	0	0	0	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	g0108	1	1	0	0	0	0	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	g0109	1	1	0	0	0	0	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	g0110	1	1	0	0	0	0	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	g0111	1	1	0	0	0	0	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	g0112	1	0	0	1	0	0	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	g0113	1	1	0	0	0	0	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	g0114	1	1	0	0	0	0	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	g0115	1	1	0	0	0	0	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	g0116	1	1	0	0	0	0	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	g0117	1	1	0	0	0	0	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	g0118	1	1	0	0	0	0	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	g0119	1	1	0	0	0	0	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	g0120	1	1	0	0	0	0	CFAP107	chr1	12741200	12768699
CFAP119_chr16_30752423_30767062	0/0	g0001	95	8	24	57	4	2	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	g0002	79	25	16	19	3	16	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/1	g0003	18	2	9	0	3	3	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	g0004	9	9	0	0	0	0	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	g0005	9	9	0	0	0	0	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	1/0	g0006	9	7	1	0	0	0	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	g0007	5	0	3	0	2	0	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	g0008	4	0	1	2	1	0	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	g0009	3	3	0	0	0	0	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	g0010	3	3	0	0	0	0	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	g0011	3	2	0	0	0	1	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	g0012	3	0	1	0	1	1	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	g0013	2	2	0	0	0	0	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	g0014	2	0	1	0	1	0	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	g0015	1	0	0	1	0	0	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	g0016	1	0	1	0	0	0	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	g0017	1	1	0	0	0	0	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	g0018	1	1	0	0	0	0	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	g0019	1	0	1	0	0	0	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	g0020	1	0	0	0	1	0	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	g0021	1	0	0	1	0	0	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	g0022	1	1	0	0	0	0	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	g0023	1	1	0	0	0	0	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	g0024	1	0	0	0	0	1	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	g0025	1	0	0	0	0	1	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	g0026	1	1	0	0	0	0	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	g0027	1	0	1	0	0	0	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	g0028	1	1	0	0	0	0	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	g0029	1	0	0	1	0	0	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	g0030	1	0	0	1	0	0	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	g0031	1	0	1	0	0	0	CFAP119	chr16	30752423	30767062