JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CFAP119_chr16_30752423_30767062	0/0	g0032	1	1	0	0	0	0	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	g0033	1	0	1	0	0	0	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	g0034	1	0	1	0	0	0	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	g0035	1	1	0	0	0	0	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	g0036	1	0	0	0	0	1	CFAP119	chr16	30752423	30767062
CFAP126_chr1_161359733_161372876	1/1	g0001	224	45	44	89	14	30	CFAP126	chr1	161359733	161372876
CFAP126_chr1_161359733_161372876	0/0	g0002	56	2	1	45	0	8	CFAP126	chr1	161359733	161372876
CFAP126_chr1_161359733_161372876	0/0	g0003	12	0	0	10	0	2	CFAP126	chr1	161359733	161372876
CFAP126_chr1_161359733_161372876	0/0	g0004	9	7	2	0	0	0	CFAP126	chr1	161359733	161372876
CFAP126_chr1_161359733_161372876	0/0	g0005	6	6	0	0	0	0	CFAP126	chr1	161359733	161372876
CFAP126_chr1_161359733_161372876	0/0	g0006	6	6	0	0	0	0	CFAP126	chr1	161359733	161372876
CFAP126_chr1_161359733_161372876	0/0	g0007	6	5	1	0	0	0	CFAP126	chr1	161359733	161372876
CFAP126_chr1_161359733_161372876	0/0	g0008	4	0	4	0	0	0	CFAP126	chr1	161359733	161372876
CFAP126_chr1_161359733_161372876	0/0	g0009	3	2	1	0	0	0	CFAP126	chr1	161359733	161372876
CFAP126_chr1_161359733_161372876	0/0	g0010	3	3	0	0	0	0	CFAP126	chr1	161359733	161372876
CFAP126_chr1_161359733_161372876	0/0	g0011	3	3	0	0	0	0	CFAP126	chr1	161359733	161372876
CFAP126_chr1_161359733_161372876	0/0	g0012	3	3	0	0	0	0	CFAP126	chr1	161359733	161372876
CFAP126_chr1_161359733_161372876	0/0	g0013	2	0	2	0	0	0	CFAP126	chr1	161359733	161372876
CFAP126_chr1_161359733_161372876	0/0	g0014	2	2	0	0	0	0	CFAP126	chr1	161359733	161372876
CFAP126_chr1_161359733_161372876	0/0	g0015	2	0	0	2	0	0	CFAP126	chr1	161359733	161372876
CFAP126_chr1_161359733_161372876	0/0	g0016	1	0	1	0	0	0	CFAP126	chr1	161359733	161372876
CFAP126_chr1_161359733_161372876	0/0	g0017	1	1	0	0	0	0	CFAP126	chr1	161359733	161372876
CFAP126_chr1_161359733_161372876	0/0	g0018	1	0	1	0	0	0	CFAP126	chr1	161359733	161372876
CFAP126_chr1_161359733_161372876	0/0	g0019	1	0	0	0	1	0	CFAP126	chr1	161359733	161372876
CFAP126_chr1_161359733_161372876	0/0	g0020	1	0	0	1	0	0	CFAP126	chr1	161359733	161372876
CFAP126_chr1_161359733_161372876	0/0	g0021	1	0	0	0	1	0	CFAP126	chr1	161359733	161372876
CFAP126_chr1_161359733_161372876	0/0	g0022	1	0	1	0	0	0	CFAP126	chr1	161359733	161372876
CFAP126_chr1_161359733_161372876	0/0	g0023	1	1	0	0	0	0	CFAP126	chr1	161359733	161372876
CFAP126_chr1_161359733_161372876	0/0	g0024	1	0	0	1	0	0	CFAP126	chr1	161359733	161372876
CFAP141_chr1_154194085_154211333	0/0	g0001	48	0	7	34	4	3	CFAP141	chr1	154194085	154211333
CFAP141_chr1_154194085_154211333	0/0	g0002	16	16	0	0	0	0	CFAP141	chr1	154194085	154211333
CFAP141_chr1_154194085_154211333	0/0	g0003	14	0	3	11	0	0	CFAP141	chr1	154194085	154211333
CFAP141_chr1_154194085_154211333	0/0	g0004	12	4	3	3	1	1	CFAP141	chr1	154194085	154211333
CFAP141_chr1_154194085_154211333	0/0	g0005	10	0	5	4	0	1	CFAP141	chr1	154194085	154211333
CFAP141_chr1_154194085_154211333	0/0	g0006	9	0	1	8	0	0	CFAP141	chr1	154194085	154211333
CFAP141_chr1_154194085_154211333	0/0	g0007	8	0	0	6	0	2	CFAP141	chr1	154194085	154211333
CFAP141_chr1_154194085_154211333	0/0	g0008	7	0	1	5	0	1	CFAP141	chr1	154194085	154211333
CFAP141_chr1_154194085_154211333	0/0	g0009	6	0	0	5	1	0	CFAP141	chr1	154194085	154211333
CFAP141_chr1_154194085_154211333	0/0	g0010	6	0	3	2	0	1	CFAP141	chr1	154194085	154211333
CFAP141_chr1_154194085_154211333	0/0	g0011	6	0	0	5	0	1	CFAP141	chr1	154194085	154211333
CFAP141_chr1_154194085_154211333	0/0	g0012	6	4	2	0	0	0	CFAP141	chr1	154194085	154211333
CFAP141_chr1_154194085_154211333	0/0	g0013	5	1	1	2	0	1	CFAP141	chr1	154194085	154211333
CFAP141_chr1_154194085_154211333	0/0	g0014	5	1	4	0	0	0	CFAP141	chr1	154194085	154211333
CFAP141_chr1_154194085_154211333	0/0	g0015	5	2	1	0	0	2	CFAP141	chr1	154194085	154211333
CFAP141_chr1_154194085_154211333	1/0	g0016	5	2	2	0	0	0	CFAP141	chr1	154194085	154211333
CFAP141_chr1_154194085_154211333	0/0	g0017	5	1	2	0	1	1	CFAP141	chr1	154194085	154211333
CFAP141_chr1_154194085_154211333	0/0	g0018	5	0	3	0	0	2	CFAP141	chr1	154194085	154211333
CFAP141_chr1_154194085_154211333	0/0	g0019	5	0	1	4	0	0	CFAP141	chr1	154194085	154211333
CFAP141_chr1_154194085_154211333	0/0	g0020	5	0	0	5	0	0	CFAP141	chr1	154194085	154211333
CFAP141_chr1_154194085_154211333	0/0	g0021	4	0	0	1	2	1	CFAP141	chr1	154194085	154211333