JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CFAP157_chr9_127701988_127721002	0/0	g0053	1	0	0	1	0	0	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	g0054	1	0	0	0	0	1	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	g0055	1	0	1	0	0	0	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	g0056	1	0	0	1	0	0	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	g0057	1	1	0	0	0	0	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	g0058	1	0	0	0	0	1	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	g0059	1	1	0	0	0	0	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	g0060	1	1	0	0	0	0	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	g0061	1	0	1	0	0	0	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	g0062	1	0	0	1	0	0	CFAP157	chr9	127701988	127721002
CFAP161_chr15_81129270_81154179	0/0	g0001	21	0	5	16	0	0	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0002	9	1	3	4	0	1	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0003	7	0	0	6	0	1	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0004	6	0	1	4	0	1	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0005	6	0	0	6	0	0	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0006	5	4	1	0	0	0	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0007	5	0	2	2	1	0	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0008	5	0	0	5	0	0	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0009	4	0	0	4	0	0	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0010	4	3	1	0	0	0	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0011	4	3	1	0	0	0	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0012	3	2	1	0	0	0	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0013	3	0	2	1	0	0	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0014	3	0	0	3	0	0	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0015	3	0	3	0	0	0	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0016	3	1	1	1	0	0	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0017	3	0	0	3	0	0	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0018	3	0	0	3	0	0	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0019	3	0	0	0	2	1	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0020	3	0	1	0	0	2	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0021	3	0	2	0	0	1	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0022	3	0	0	3	0	0	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0023	3	2	0	1	0	0	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0024	3	0	0	2	0	1	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0025	3	0	0	1	0	2	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0026	3	2	1	0	0	0	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0027	3	3	0	0	0	0	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0028	3	2	1	0	0	0	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0029	3	0	0	0	0	3	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0030	3	3	0	0	0	0	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0031	3	0	0	3	0	0	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0032	3	0	0	3	0	0	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0033	3	0	2	1	0	0	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0034	3	0	1	1	0	1	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0035	2	0	2	0	0	0	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0036	2	0	0	0	0	2	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0037	2	0	0	2	0	0	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0038	2	0	0	2	0	0	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0039	2	0	2	0	0	0	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	g0040	2	0	0	2	0	0	CFAP161	chr15	81129270	81154179