JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CFAP276_chr1_109100951_109117747	0/0	g0070	1	0	1	0	0	0	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	g0071	1	1	0	0	0	0	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	g0072	1	0	0	1	0	0	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	g0073	1	0	0	1	0	0	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	g0074	1	0	0	1	0	0	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	g0075	1	1	0	0	0	0	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	g0076	1	0	0	0	1	0	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	1/0	g0077	1	0	0	0	0	0	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	g0078	1	0	0	0	0	1	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	g0079	1	0	0	0	1	0	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	g0080	1	0	0	1	0	0	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	g0081	1	0	0	1	0	0	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	g0082	1	0	0	1	0	0	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	g0083	1	0	0	1	0	0	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	g0084	1	0	0	0	1	0	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	g0085	1	0	0	0	0	1	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	g0086	1	0	0	1	0	0	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	g0087	1	0	0	1	0	0	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	g0088	1	0	1	0	0	0	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	g0089	1	0	1	0	0	0	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	g0090	1	0	1	0	0	0	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	g0091	1	0	1	0	0	0	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	g0092	1	0	0	1	0	0	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	g0093	1	0	0	0	0	1	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	g0094	1	0	0	1	0	0	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	g0095	1	0	1	0	0	0	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	g0096	1	0	0	0	0	1	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	g0097	1	0	0	0	0	1	CFAP276	chr1	109100951	109117747
CFAP298_chr21_32594354_32617377	1/0	g0001	50	7	8	24	4	6	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	g0002	18	2	4	6	1	5	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	g0003	13	0	4	9	0	0	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/1	g0004	12	2	0	4	0	5	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	g0005	10	0	6	4	0	0	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	g0006	10	1	7	0	0	2	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	g0007	9	0	0	9	0	0	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	g0008	8	0	0	8	0	0	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	g0009	7	0	3	4	0	0	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	g0010	6	3	0	3	0	0	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	g0011	6	4	1	0	0	1	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	g0012	6	1	1	4	0	0	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	g0013	5	0	0	5	0	0	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	g0014	5	0	0	3	1	1	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	g0015	4	1	1	2	0	0	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	g0016	3	2	0	1	0	0	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	g0017	3	1	0	1	0	1	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	g0018	3	0	0	3	0	0	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	g0019	3	0	0	3	0	0	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	g0020	3	3	0	0	0	0	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	g0021	3	0	0	3	0	0	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	g0022	3	0	1	0	1	1	CFAP298	chr21	32594354	32617377