JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CFAP97D2_chr13_114174257_114228085	0/0	g0326	1	0	1	0	0	0	CFAP97D2	chr13	114174257	114228085
CFAP97D2_chr13_114174257_114228085	0/0	g0327	1	1	0	0	0	0	CFAP97D2	chr13	114174257	114228085
CFAP97D2_chr13_114174257_114228085	0/0	g0328	1	0	0	1	0	0	CFAP97D2	chr13	114174257	114228085
CFAP97D2_chr13_114174257_114228085	0/0	g0329	1	0	0	1	0	0	CFAP97D2	chr13	114174257	114228085
CFAP97D2_chr13_114174257_114228085	0/0	g0330	1	0	0	1	0	0	CFAP97D2	chr13	114174257	114228085
CFAP97D2_chr13_114174257_114228085	0/0	g0331	1	0	1	0	0	0	CFAP97D2	chr13	114174257	114228085
CFAP97D2_chr13_114174257_114228085	0/0	g0332	1	0	0	0	1	0	CFAP97D2	chr13	114174257	114228085
CFAP97D2_chr13_114174257_114228085	0/0	g0333	1	0	0	0	0	1	CFAP97D2	chr13	114174257	114228085
CFAP97D2_chr13_114174257_114228085	0/0	g0334	1	0	1	0	0	0	CFAP97D2	chr13	114174257	114228085
CFAP97D2_chr13_114174257_114228085	0/0	g0335	1	1	0	0	0	0	CFAP97D2	chr13	114174257	114228085
CFAP97D2_chr13_114174257_114228085	0/0	g0336	1	1	0	0	0	0	CFAP97D2	chr13	114174257	114228085
CFAP97D2_chr13_114174257_114228085	0/0	g0337	1	1	0	0	0	0	CFAP97D2	chr13	114174257	114228085
CFAP97D2_chr13_114174257_114228085	0/0	g0338	1	0	0	1	0	0	CFAP97D2	chr13	114174257	114228085
CFAP97D2_chr13_114174257_114228085	0/0	g0339	1	0	0	1	0	0	CFAP97D2	chr13	114174257	114228085
CFAP97D2_chr13_114174257_114228085	0/0	g0340	1	0	0	1	0	0	CFAP97D2	chr13	114174257	114228085
CFAP97D2_chr13_114174257_114228085	0/0	g0341	1	0	0	1	0	0	CFAP97D2	chr13	114174257	114228085
CFAP97D2_chr13_114174257_114228085	0/0	g0342	1	0	0	1	0	0	CFAP97D2	chr13	114174257	114228085
CFAP97D2_chr13_114174257_114228085	0/0	g0343	1	0	1	0	0	0	CFAP97D2	chr13	114174257	114228085
CFAP97D2_chr13_114174257_114228085	0/0	g0344	1	0	0	1	0	0	CFAP97D2	chr13	114174257	114228085
CFAP97D2_chr13_114174257_114228085	0/0	g0345	1	0	0	1	0	0	CFAP97D2	chr13	114174257	114228085
CFAP97D2_chr13_114174257_114228085	0/0	g0346	1	0	1	0	0	0	CFAP97D2	chr13	114174257	114228085
CFAP97D2_chr13_114174257_114228085	0/0	g0347	1	0	1	0	0	0	CFAP97D2	chr13	114174257	114228085
CFAP97D2_chr13_114174257_114228085	0/0	g0348	1	0	1	0	0	0	CFAP97D2	chr13	114174257	114228085
CFAP97D2_chr13_114174257_114228085	0/0	g0349	1	0	1	0	0	0	CFAP97D2	chr13	114174257	114228085
CFAP97D2_chr13_114174257_114228085	0/0	g0350	1	0	0	1	0	0	CFAP97D2	chr13	114174257	114228085
CFAP97D2_chr13_114174257_114228085	0/0	g0351	1	0	1	0	0	0	CFAP97D2	chr13	114174257	114228085
CFAP97D2_chr13_114174257_114228085	0/0	g0352	1	0	1	0	0	0	CFAP97D2	chr13	114174257	114228085
CFAP97_chr4_185154665_185209000	0/0	g0001	17	0	4	9	1	3	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	g0002	9	0	0	9	0	0	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	g0003	4	0	1	0	2	1	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	g0004	4	4	0	0	0	0	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	g0005	4	0	0	4	0	0	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	g0006	4	0	1	3	0	0	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	g0007	3	0	1	0	1	1	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	g0008	3	1	2	0	0	0	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	g0009	3	0	2	1	0	0	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	g0010	2	0	2	0	0	0	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	g0011	2	0	2	0	0	0	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	g0012	2	0	1	0	1	0	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	g0013	2	0	0	2	0	0	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	g0014	2	1	1	0	0	0	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	g0015	2	0	0	2	0	0	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	g0016	2	0	0	0	0	2	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	g0017	2	2	0	0	0	0	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	g0018	2	0	0	2	0	0	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	g0019	2	2	0	0	0	0	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	g0020	2	2	0	0	0	0	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	g0021	2	0	0	2	0	0	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	g0022	2	0	0	2	0	0	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	g0023	2	0	0	2	0	0	CFAP97	chr4	185154665	185209000