JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CFAP99_chr4_2413955_2468002	0/0	g0287	1	1	0	0	0	0	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	g0288	1	1	0	0	0	0	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	g0289	1	1	0	0	0	0	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	g0290	1	1	0	0	0	0	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	g0291	1	0	0	1	0	0	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	g0292	1	0	0	1	0	0	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	g0293	1	1	0	0	0	0	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	g0294	1	0	0	1	0	0	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	g0295	1	0	0	1	0	0	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	g0296	1	0	0	1	0	0	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	g0297	1	0	0	1	0	0	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	g0298	1	0	0	1	0	0	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	g0299	1	0	0	1	0	0	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	g0300	1	0	0	1	0	0	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	g0301	1	0	1	0	0	0	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	g0302	1	1	0	0	0	0	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	g0303	1	1	0	0	0	0	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	g0304	1	0	0	1	0	0	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	g0305	1	1	0	0	0	0	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	g0306	1	1	0	0	0	0	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	g0307	1	1	0	0	0	0	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	g0308	1	1	0	0	0	0	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	g0309	1	1	0	0	0	0	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	g0310	1	1	0	0	0	0	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	g0311	1	1	0	0	0	0	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	g0312	1	1	0	0	0	0	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	g0313	1	0	1	0	0	0	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	g0314	1	1	0	0	0	0	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	g0315	1	1	0	0	0	0	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	g0316	1	0	1	0	0	0	CFAP99	chr4	2413955	2468002
CFB_chr6_31941095_31957084	0/0	g0001	99	9	25	59	2	4	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/1	g0002	99	2	16	62	6	12	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	g0003	86	36	17	13	4	16	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	g0004	16	7	7	0	2	0	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	g0005	15	0	5	7	1	2	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	g0006	14	14	0	0	0	0	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	g0007	14	1	0	13	0	0	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	g0008	12	0	0	7	0	5	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	g0009	11	0	0	11	0	0	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	g0010	9	5	0	2	1	1	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	g0011	7	2	3	0	2	0	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	g0012	6	0	0	6	0	0	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	g0013	5	0	5	0	0	0	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	g0014	5	3	1	0	0	1	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	g0015	5	5	0	0	0	0	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	g0016	4	0	0	3	0	1	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	g0017	3	3	0	0	0	0	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	g0018	3	0	0	3	0	0	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	g0019	3	3	0	0	0	0	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	g0020	3	0	0	3	0	0	CFB	chr6	31941095	31957084