JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CFB_chr6_31941095_31957084	0/0	g0021	2	0	0	1	0	1	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	g0022	1	0	0	0	0	1	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	g0023	1	0	1	0	0	0	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	g0024	1	0	0	1	0	0	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	g0025	1	1	0	0	0	0	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	g0026	1	0	0	1	0	0	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	g0027	1	0	1	0	0	0	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	g0028	1	1	0	0	0	0	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	g0029	1	1	0	0	0	0	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	g0030	1	1	0	0	0	0	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	g0031	1	0	1	0	0	0	CFB	chr6	31941095	31957084
CFC1B_chr2_130516222_130533603	0/0	g0001	2	2	0	0	0	0	CFC1B	chr2	130516222	130533603
CFC1B_chr2_130516222_130533603	0/0	g0002	2	2	0	0	0	0	CFC1B	chr2	130516222	130533603
CFC1B_chr2_130516222_130533603	0/0	g0003	2	0	2	0	0	0	CFC1B	chr2	130516222	130533603
CFC1B_chr2_130516222_130533603	0/0	g0004	1	1	0	0	0	0	CFC1B	chr2	130516222	130533603
CFC1B_chr2_130516222_130533603	0/0	g0005	1	1	0	0	0	0	CFC1B	chr2	130516222	130533603
CFC1B_chr2_130516222_130533603	0/0	g0006	1	1	0	0	0	0	CFC1B	chr2	130516222	130533603
CFC1B_chr2_130516222_130533603	0/0	g0007	1	1	0	0	0	0	CFC1B	chr2	130516222	130533603
CFC1B_chr2_130516222_130533603	0/0	g0008	1	1	0	0	0	0	CFC1B	chr2	130516222	130533603
CFC1B_chr2_130516222_130533603	0/0	g0009	1	1	0	0	0	0	CFC1B	chr2	130516222	130533603
CFC1_chr2_130587165_130604575	0/0	g0001	128	12	28	61	7	20	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	g0002	24	3	3	17	0	1	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	g0003	10	0	0	9	0	1	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	g0004	10	0	0	8	0	2	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	g0005	7	3	0	3	1	0	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	g0006	6	0	0	6	0	0	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	g0007	3	0	2	1	0	0	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	g0008	2	1	1	0	0	0	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	g0009	2	2	0	0	0	0	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	g0010	2	0	0	2	0	0	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	g0011	2	0	0	2	0	0	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	g0012	2	0	2	0	0	0	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	g0013	2	0	0	2	0	0	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	g0014	2	0	0	2	0	0	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	g0015	2	0	2	0	0	0	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	g0016	2	0	0	2	0	0	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	g0017	2	1	1	0	0	0	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	g0018	1	0	0	1	0	0	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	g0019	1	0	1	0	0	0	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	g0020	1	1	0	0	0	0	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	g0021	1	1	0	0	0	0	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	g0022	1	1	0	0	0	0	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	g0023	1	1	0	0	0	0	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	g0024	1	1	0	0	0	0	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	g0025	1	0	0	1	0	0	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	g0026	1	0	0	1	0	0	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	g0027	1	0	1	0	0	0	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	g0028	1	0	0	1	0	0	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	g0029	1	0	1	0	0	0	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	g0030	1	0	0	1	0	0	CFC1	chr2	130587165	130604575