JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CFDP1_chr16_75288710_75438503	0/0	g0280	1	0	0	0	0	1	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	g0281	1	0	0	1	0	0	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	g0282	1	0	0	0	1	0	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	g0283	1	0	0	0	0	1	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	g0284	1	0	0	0	1	0	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	g0285	1	1	0	0	0	0	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	g0286	1	1	0	0	0	0	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	g0287	1	0	1	0	0	0	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	g0288	1	1	0	0	0	0	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	g0289	1	1	0	0	0	0	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	g0290	1	0	1	0	0	0	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	g0291	1	1	0	0	0	0	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	g0292	1	0	1	0	0	0	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	g0293	1	0	0	0	1	0	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	g0294	1	0	0	0	1	0	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	g0295	1	0	0	0	1	0	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	g0296	1	0	0	0	0	1	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	g0297	1	1	0	0	0	0	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	g0298	1	0	1	0	0	0	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	g0299	1	0	1	0	0	0	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	g0300	1	0	0	0	1	0	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	g0301	1	1	0	0	0	0	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	g0302	1	0	1	0	0	0	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	g0303	1	0	0	0	0	1	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	g0304	1	1	0	0	0	0	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	g0305	1	1	0	0	0	0	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	g0306	1	1	0	0	0	0	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	g0307	1	1	0	0	0	0	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	g0308	1	1	0	0	0	0	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	g0309	1	1	0	0	0	0	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	g0310	1	0	0	1	0	0	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	g0311	1	0	0	1	0	0	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	g0312	1	0	0	1	0	0	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	g0313	1	1	0	0	0	0	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	g0314	1	0	0	1	0	0	CFDP1	chr16	75288710	75438503
CFD_chr19_854664_868641	0/0	g0001	45	3	10	16	3	13	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	g0002	39	0	2	35	0	2	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	g0003	18	6	3	8	0	1	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	g0004	16	2	3	3	2	6	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	g0005	12	0	1	11	0	0	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	g0006	9	0	9	0	0	0	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	g0007	9	0	2	7	0	0	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	g0008	9	4	4	0	0	1	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	g0009	8	0	0	6	0	2	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	g0010	7	2	1	3	1	0	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	g0011	7	7	0	0	0	0	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	g0012	6	0	0	6	0	0	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/1	g0013	5	0	0	3	0	1	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	g0014	5	0	2	0	1	2	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	g0015	4	1	1	1	0	1	CFD	chr19	854664	868641