JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CFD_chr19_854664_868641	0/0	g0066	1	1	0	0	0	0	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	g0067	1	0	0	1	0	0	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	g0068	1	1	0	0	0	0	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	g0069	1	0	0	0	1	0	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	g0070	1	1	0	0	0	0	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	g0071	1	1	0	0	0	0	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	g0072	1	0	1	0	0	0	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	g0073	1	1	0	0	0	0	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	g0074	1	0	0	1	0	0	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	g0075	1	1	0	0	0	0	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	g0076	1	1	0	0	0	0	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	g0077	1	0	0	1	0	0	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	g0078	1	1	0	0	0	0	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	g0079	1	0	0	0	0	1	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	g0080	1	1	0	0	0	0	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	g0081	1	1	0	0	0	0	CFD	chr19	854664	868641
CFHR1_chr1_196814731_196837189	0/0	g0001	48	1	12	27	3	5	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	g0002	17	1	1	14	0	1	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	g0003	17	1	5	11	0	0	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	g0004	11	1	0	10	0	0	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	g0005	8	0	0	8	0	0	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	g0006	6	0	0	6	0	0	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	g0007	6	0	2	4	0	0	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	g0008	5	0	0	5	0	0	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	g0009	5	0	4	0	1	0	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	g0010	5	0	1	4	0	0	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	g0011	5	0	1	4	0	0	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	g0012	4	0	1	2	1	0	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	g0013	4	0	0	4	0	0	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	g0014	4	0	0	4	0	0	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	g0015	4	0	0	4	0	0	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	g0016	3	3	0	0	0	0	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	g0017	3	0	0	3	0	0	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	g0018	3	1	0	2	0	0	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	g0019	3	0	0	2	0	1	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	g0020	3	0	2	0	0	1	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	g0021	3	0	0	3	0	0	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	g0022	3	0	0	3	0	0	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	g0023	3	0	0	3	0	0	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	g0024	2	0	0	0	1	1	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	g0025	2	0	0	2	0	0	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	g0026	2	0	0	2	0	0	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	g0027	2	0	0	2	0	0	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	g0028	2	1	1	0	0	0	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	g0029	2	0	0	2	0	0	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	g0030	2	0	0	2	0	0	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	g0031	2	2	0	0	0	0	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	g0032	2	2	0	0	0	0	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	g0033	2	0	1	0	1	0	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	g0034	2	0	0	2	0	0	CFHR1	chr1	196814731	196837189