JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CFHR2_chr1_196938738_196964622	0/0	g0124	1	0	0	1	0	0	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	g0125	1	0	1	0	0	0	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	g0126	1	1	0	0	0	0	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	g0127	1	1	0	0	0	0	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	g0128	1	1	0	0	0	0	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	g0129	1	0	0	0	0	1	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	g0130	1	0	0	1	0	0	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	g0131	1	1	0	0	0	0	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	g0132	1	1	0	0	0	0	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	g0133	1	0	0	0	0	1	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	g0134	1	1	0	0	0	0	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	g0135	1	1	0	0	0	0	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	g0136	1	1	0	0	0	0	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	g0137	1	1	0	0	0	0	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	g0138	1	1	0	0	0	0	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	g0139	1	0	1	0	0	0	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	g0140	1	0	0	1	0	0	CFHR2	chr1	196938738	196964622
CFHR3_chr1_196769840_196800407	0/0	g0001	44	0	8	36	0	0	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	g0002	20	0	6	8	2	4	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	g0003	14	1	1	9	1	2	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	g0004	12	0	0	11	0	1	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	g0005	9	0	2	7	0	0	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	g0006	9	0	2	7	0	0	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	g0007	5	0	2	3	0	0	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	g0008	5	0	0	5	0	0	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	g0009	5	0	0	5	0	0	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	g0010	5	0	0	5	0	0	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	g0011	4	0	1	3	0	0	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	g0012	3	0	1	2	0	0	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	1/0	g0013	3	0	1	0	0	1	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	g0014	3	0	1	0	0	2	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	g0015	3	0	0	3	0	0	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	g0016	3	0	0	3	0	0	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	g0017	3	0	0	3	0	0	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	g0018	3	3	0	0	0	0	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	g0019	2	0	2	0	0	0	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	g0020	2	0	2	0	0	0	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	g0021	2	2	0	0	0	0	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	g0022	2	0	2	0	0	0	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	g0023	2	0	0	2	0	0	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	g0024	2	0	0	2	0	0	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	g0025	2	0	0	2	0	0	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	g0026	2	2	0	0	0	0	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	g0027	2	2	0	0	0	0	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	g0028	2	0	1	0	1	0	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	g0029	2	1	1	0	0	0	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	g0030	2	0	0	2	0	0	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	g0031	1	1	0	0	0	0	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	g0032	1	1	0	0	0	0	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	g0033	1	0	0	1	0	0	CFHR3	chr1	196769840	196800407