JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CFL1_chr11_65849673_65863180	0/0	g0011	3	3	0	0	0	0	CFL1	chr11	65849673	65863180
CFL1_chr11_65849673_65863180	0/0	g0012	3	0	0	3	0	0	CFL1	chr11	65849673	65863180
CFL1_chr11_65849673_65863180	0/0	g0013	3	0	0	3	0	0	CFL1	chr11	65849673	65863180
CFL1_chr11_65849673_65863180	0/0	g0014	2	2	0	0	0	0	CFL1	chr11	65849673	65863180
CFL1_chr11_65849673_65863180	0/0	g0015	2	1	0	1	0	0	CFL1	chr11	65849673	65863180
CFL1_chr11_65849673_65863180	0/0	g0016	2	0	0	2	0	0	CFL1	chr11	65849673	65863180
CFL1_chr11_65849673_65863180	0/0	g0017	2	0	0	2	0	0	CFL1	chr11	65849673	65863180
CFL1_chr11_65849673_65863180	0/0	g0018	1	0	0	1	0	0	CFL1	chr11	65849673	65863180
CFL1_chr11_65849673_65863180	0/0	g0019	1	1	0	0	0	0	CFL1	chr11	65849673	65863180
CFL1_chr11_65849673_65863180	0/0	g0020	1	1	0	0	0	0	CFL1	chr11	65849673	65863180
CFL1_chr11_65849673_65863180	0/1	g0021	1	0	0	0	0	0	CFL1	chr11	65849673	65863180
CFL1_chr11_65849673_65863180	0/0	g0022	1	0	1	0	0	0	CFL1	chr11	65849673	65863180
CFL1_chr11_65849673_65863180	0/0	g0023	1	0	0	0	0	1	CFL1	chr11	65849673	65863180
CFL1_chr11_65849673_65863180	0/0	g0024	1	0	0	1	0	0	CFL1	chr11	65849673	65863180
CFL1_chr11_65849673_65863180	0/0	g0025	1	0	0	0	0	1	CFL1	chr11	65849673	65863180
CFL1_chr11_65849673_65863180	0/0	g0026	1	0	0	1	0	0	CFL1	chr11	65849673	65863180
CFL1_chr11_65849673_65863180	0/0	g0027	1	0	0	0	0	1	CFL1	chr11	65849673	65863180
CFL1_chr11_65849673_65863180	0/0	g0028	1	1	0	0	0	0	CFL1	chr11	65849673	65863180
CFL1_chr11_65849673_65863180	0/0	g0029	1	0	0	1	0	0	CFL1	chr11	65849673	65863180
CFL1_chr11_65849673_65863180	0/0	g0030	1	1	0	0	0	0	CFL1	chr11	65849673	65863180
CFL1_chr11_65849673_65863180	0/0	g0031	1	0	0	1	0	0	CFL1	chr11	65849673	65863180
CFL1_chr11_65849673_65863180	0/0	g0032	1	0	0	1	0	0	CFL1	chr11	65849673	65863180
CFL1_chr11_65849673_65863180	0/0	g0033	1	0	0	1	0	0	CFL1	chr11	65849673	65863180
CFL1_chr11_65849673_65863180	0/0	g0034	1	0	1	0	0	0	CFL1	chr11	65849673	65863180
CFL2_chr14_34704113_34719593	0/0	g0001	76	5	9	53	0	9	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	g0002	50	6	15	14	8	7	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	g0003	49	4	1	34	1	9	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	g0004	30	0	0	26	0	4	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	g0005	22	11	4	3	0	4	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	1/0	g0006	21	10	5	0	3	2	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	g0007	20	1	4	13	2	0	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	g0008	19	1	15	0	0	3	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	g0009	10	2	4	3	0	1	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	g0010	9	9	0	0	0	0	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	g0011	9	6	3	0	0	0	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	g0012	9	0	0	9	0	0	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	g0013	7	0	0	7	0	0	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	g0014	6	2	0	1	0	3	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	g0015	6	0	2	4	0	0	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	g0016	5	5	0	0	0	0	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	g0017	4	3	1	0	0	0	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	g0018	3	1	1	0	1	0	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	g0019	3	3	0	0	0	0	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	g0020	3	2	0	1	0	0	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	g0021	3	0	0	3	0	0	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	g0022	3	0	2	0	0	1	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	g0023	3	3	0	0	0	0	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	g0024	2	2	0	0	0	0	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	g0025	2	2	0	0	0	0	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	g0026	2	2	0	0	0	0	CFL2	chr14	34704113	34719593