JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CFLAR_chr2_201111164_201181687	0/0	g0202	1	1	0	0	0	0	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	g0203	1	1	0	0	0	0	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	g0204	1	1	0	0	0	0	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	g0205	1	1	0	0	0	0	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	g0206	1	0	0	1	0	0	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	g0207	1	0	0	0	0	1	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	g0208	1	1	0	0	0	0	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	g0209	1	0	0	0	0	1	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	g0210	1	1	0	0	0	0	CFLAR	chr2	201111164	201181687
CFP_chrX_47618282_47634930	0/1	g0001	111	5	20	68	6	11	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0002	30	17	7	1	2	3	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0003	21	4	10	5	0	2	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0004	19	7	0	11	0	1	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0005	13	2	3	8	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0006	8	0	3	3	0	2	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0007	7	0	0	7	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0008	6	6	0	0	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0009	5	0	0	5	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0010	5	0	3	0	1	1	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0011	5	3	1	1	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0012	4	3	0	0	0	1	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0013	4	3	0	0	0	1	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0014	4	0	0	4	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0015	3	1	2	0	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0016	3	0	2	0	0	1	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0017	3	2	1	0	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0018	3	3	0	0	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0019	2	0	2	0	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0020	2	0	0	2	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0021	2	0	1	0	0	1	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0022	2	2	0	0	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0023	2	2	0	0	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0024	2	0	0	0	2	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0025	1	1	0	0	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0026	1	0	0	1	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0027	1	1	0	0	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0028	1	1	0	0	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0029	1	1	0	0	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0030	1	1	0	0	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	1/0	g0031	1	0	0	0	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0032	1	0	1	0	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0033	1	0	1	0	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0034	1	0	0	0	0	1	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0035	1	0	0	0	0	1	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0036	1	0	0	1	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0037	1	0	0	1	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0038	1	0	1	0	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0039	1	0	1	0	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0040	1	0	0	1	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0041	1	0	1	0	0	0	CFP	chrX	47618282	47634930