JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CFP_chrX_47618282_47634930	0/0	g0042	1	0	1	0	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0043	1	1	0	0	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0044	1	0	0	1	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0045	1	1	0	0	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0046	1	0	0	0	0	1	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0047	1	0	0	0	0	1	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0048	1	1	0	0	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0049	1	1	0	0	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0050	1	0	1	0	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0051	1	0	0	1	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0052	1	0	1	0	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0053	1	1	0	0	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0054	1	1	0	0	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0055	1	1	0	0	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0056	1	1	0	0	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0057	1	1	0	0	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0058	1	1	0	0	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0059	1	1	0	0	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0060	1	1	0	0	0	0	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	g0061	1	1	0	0	0	0	CFP	chrX	47618282	47634930
CFTR_chr7_117475025_117673665	0/0	g0001	2	0	2	0	0	0	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	g0002	1	1	0	0	0	0	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	g0003	1	0	1	0	0	0	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	g0004	1	1	0	0	0	0	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	g0005	1	1	0	0	0	0	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	g0006	1	0	1	0	0	0	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	g0007	1	0	1	0	0	0	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	g0008	1	1	0	0	0	0	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	g0009	1	1	0	0	0	0	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	g0010	1	0	0	0	1	0	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	g0011	1	0	0	0	1	0	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/1	g0012	1	0	0	0	0	0	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	g0013	1	1	0	0	0	0	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	g0014	1	1	0	0	0	0	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	g0015	1	0	0	0	0	1	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	g0016	1	1	0	0	0	0	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	g0017	1	1	0	0	0	0	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	g0018	1	1	0	0	0	0	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	g0019	1	0	0	1	0	0	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	g0020	1	0	0	1	0	0	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	g0021	1	0	0	1	0	0	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	g0022	1	0	0	1	0	0	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	g0023	1	0	0	1	0	0	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	g0024	1	0	0	1	0	0	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	g0025	1	0	0	1	0	0	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	g0026	1	0	0	0	0	1	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	g0027	1	0	0	1	0	0	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	g0028	1	0	0	1	0	0	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	g0029	1	0	0	1	0	0	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	g0030	1	0	0	1	0	0	CFTR	chr7	117475025	117673665