JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CGAS_chr6_73418711_73457297	0/0	g0330	1	0	0	1	0	0	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	g0331	1	0	0	1	0	0	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	g0332	1	0	0	0	0	1	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	g0333	1	0	0	1	0	0	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	g0334	1	0	0	1	0	0	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	g0335	1	0	1	0	0	0	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	g0336	1	1	0	0	0	0	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	g0337	1	0	0	0	0	1	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	g0338	1	0	0	1	0	0	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	g0339	1	0	0	1	0	0	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	g0340	1	0	0	1	0	0	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	g0341	1	0	0	1	0	0	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	g0342	1	0	0	1	0	0	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	g0343	1	0	1	0	0	0	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	g0344	1	0	0	0	0	1	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	g0345	1	1	0	0	0	0	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	g0346	1	1	0	0	0	0	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	g0347	1	0	0	0	1	0	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	g0348	1	0	0	0	1	0	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	g0349	1	1	0	0	0	0	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	g0350	1	0	1	0	0	0	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	g0351	1	0	0	1	0	0	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	g0352	1	1	0	0	0	0	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	g0353	1	1	0	0	0	0	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	g0354	1	1	0	0	0	0	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	g0355	1	0	1	0	0	0	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	g0356	1	0	0	1	0	0	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	1/0	g0357	1	0	0	0	0	0	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	g0358	1	1	0	0	0	0	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	g0359	1	1	0	0	0	0	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	g0360	1	1	0	0	0	0	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	g0361	1	0	0	1	0	0	CGAS	chr6	73418711	73457297
CGA_chr6_87080498_87100106	1/0	g0001	75	3	14	41	8	8	CGA	chr6	87080498	87100106
CGA_chr6_87080498_87100106	0/0	g0002	72	4	10	49	2	7	CGA	chr6	87080498	87100106
CGA_chr6_87080498_87100106	0/0	g0003	40	2	11	22	0	5	CGA	chr6	87080498	87100106
CGA_chr6_87080498_87100106	0/1	g0004	13	0	3	6	1	2	CGA	chr6	87080498	87100106
CGA_chr6_87080498_87100106	0/0	g0005	11	0	0	11	0	0	CGA	chr6	87080498	87100106
CGA_chr6_87080498_87100106	0/0	g0006	8	8	0	0	0	0	CGA	chr6	87080498	87100106
CGA_chr6_87080498_87100106	0/0	g0007	8	0	4	1	2	1	CGA	chr6	87080498	87100106
CGA_chr6_87080498_87100106	0/0	g0008	7	0	1	5	1	0	CGA	chr6	87080498	87100106
CGA_chr6_87080498_87100106	0/0	g0009	6	5	0	0	0	1	CGA	chr6	87080498	87100106
CGA_chr6_87080498_87100106	0/0	g0010	5	5	0	0	0	0	CGA	chr6	87080498	87100106
CGA_chr6_87080498_87100106	0/0	g0011	5	0	0	5	0	0	CGA	chr6	87080498	87100106
CGA_chr6_87080498_87100106	0/0	g0012	5	0	1	1	0	3	CGA	chr6	87080498	87100106
CGA_chr6_87080498_87100106	0/0	g0013	5	4	0	1	0	0	CGA	chr6	87080498	87100106
CGA_chr6_87080498_87100106	0/0	g0014	4	4	0	0	0	0	CGA	chr6	87080498	87100106
CGA_chr6_87080498_87100106	0/0	g0015	4	0	1	2	0	1	CGA	chr6	87080498	87100106
CGA_chr6_87080498_87100106	0/0	g0016	4	0	3	1	0	0	CGA	chr6	87080498	87100106
CGA_chr6_87080498_87100106	0/0	g0017	4	0	0	4	0	0	CGA	chr6	87080498	87100106
CGA_chr6_87080498_87100106	0/0	g0018	4	0	0	1	3	0	CGA	chr6	87080498	87100106