JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CGA_chr6_87080498_87100106	0/0	g0119	1	0	1	0	0	0	CGA	chr6	87080498	87100106
CGA_chr6_87080498_87100106	0/0	g0120	1	0	0	1	0	0	CGA	chr6	87080498	87100106
CGB1_chr19_49030569_49041895	1/0	g0001	132	11	17	86	4	13	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/1	g0002	77	33	19	6	3	15	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0003	48	5	18	14	3	8	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0004	25	0	3	20	0	2	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0005	17	1	12	0	0	4	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0006	8	6	2	0	0	0	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0007	6	4	1	0	1	0	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0008	6	6	0	0	0	0	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0009	5	0	0	5	0	0	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0010	4	4	0	0	0	0	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0011	4	3	1	0	0	0	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0012	4	4	0	0	0	0	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0013	3	0	0	3	0	0	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0014	3	3	0	0	0	0	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0015	3	3	0	0	0	0	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0016	3	0	0	3	0	0	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0017	2	0	2	0	0	0	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0018	2	0	2	0	0	0	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0019	2	1	1	0	0	0	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0020	2	0	0	2	0	0	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0021	2	0	2	0	0	0	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0022	1	0	0	1	0	0	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0023	1	1	0	0	0	0	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0024	1	0	0	0	1	0	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0025	1	0	1	0	0	0	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0026	1	1	0	0	0	0	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0027	1	0	1	0	0	0	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0028	1	1	0	0	0	0	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0029	1	0	0	1	0	0	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0030	1	0	0	0	0	1	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0031	1	0	0	0	0	1	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0032	1	0	0	0	0	1	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0033	1	0	0	1	0	0	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0034	1	1	0	0	0	0	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0035	1	0	0	0	0	1	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0036	1	0	0	1	0	0	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0037	1	0	0	1	0	0	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0038	1	0	0	1	0	0	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	g0039	1	0	0	1	0	0	CGB1	chr19	49030569	49041895
CGB2_chr19_49026890_49038238	0/0	g0001	228	37	52	104	8	27	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	g0002	85	22	17	26	5	15	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	g0003	6	6	0	0	0	0	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	g0004	5	0	4	1	0	0	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	g0005	4	4	0	0	0	0	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	g0006	4	0	0	4	0	0	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	g0007	4	2	2	0	0	0	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	g0008	3	3	0	0	0	0	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	g0009	3	0	0	1	0	2	CGB2	chr19	49026890	49038238