JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CGB3_chr19_49017869_49029333	0/0	g0024	1	0	1	0	0	0	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	g0025	1	0	1	0	0	0	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	g0026	1	1	0	0	0	0	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	g0027	1	0	0	1	0	0	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	g0028	1	0	0	1	0	0	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	g0029	1	0	0	1	0	0	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	g0030	1	0	1	0	0	0	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	g0031	1	1	0	0	0	0	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	g0032	1	1	0	0	0	0	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	g0033	1	0	0	0	0	1	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	g0034	1	1	0	0	0	0	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	g0035	1	0	0	1	0	0	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	g0036	1	0	1	0	0	0	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	g0037	1	0	1	0	0	0	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	g0038	1	0	0	1	0	0	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	g0039	1	0	0	1	0	0	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	g0040	1	0	1	0	0	0	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	g0041	1	0	0	1	0	0	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	g0042	1	1	0	0	0	0	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	g0043	1	0	1	0	0	0	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	g0044	1	0	1	0	0	0	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	g0045	1	1	0	0	0	0	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	g0046	1	1	0	0	0	0	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	g0047	1	1	0	0	0	0	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	g0048	1	0	0	1	0	0	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	g0049	1	1	0	0	0	0	CGB3	chr19	49017869	49029333
CGB5_chr19_49038848_49050311	1/1	g0001	223	42	34	112	9	24	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	g0002	81	17	28	18	3	15	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	g0003	15	13	2	0	0	0	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	g0004	9	0	2	7	0	0	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	g0005	8	0	0	8	0	0	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	g0006	7	5	1	0	1	0	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	g0007	5	5	0	0	0	0	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	g0008	5	0	0	4	0	1	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	g0009	4	3	1	0	0	0	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	g0010	4	4	0	0	0	0	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	g0011	3	1	0	0	1	1	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	g0012	3	0	0	3	0	0	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	g0013	3	0	0	1	0	2	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	g0014	2	1	1	0	0	0	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	g0015	2	1	1	0	0	0	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	g0016	2	1	1	0	0	0	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	g0017	1	0	0	0	0	1	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	g0018	1	1	0	0	0	0	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	g0019	1	0	1	0	0	0	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	g0020	1	0	0	1	0	0	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	g0021	1	0	0	1	0	0	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	g0022	1	0	0	1	0	0	CGB5	chr19	49038848	49050311
CGB7_chr19_49049274_49062749	1/0	g0001	164	25	26	99	2	11	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	g0002	42	16	7	17	0	2	CGB7	chr19	49049274	49062749