JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CGB7_chr19_49049274_49062749	0/0	g0053	1	1	0	0	0	0	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	g0054	1	0	0	0	0	1	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	g0055	1	0	1	0	0	0	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	g0056	1	0	0	0	0	1	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	g0057	1	1	0	0	0	0	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	g0058	1	1	0	0	0	0	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	g0059	1	0	1	0	0	0	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	g0060	1	1	0	0	0	0	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	g0061	1	0	0	0	0	1	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	g0062	1	0	0	1	0	0	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	g0063	1	0	0	1	0	0	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	g0064	1	0	0	0	1	0	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	g0065	1	0	0	0	1	0	CGB7	chr19	49049274	49062749
CGB8_chr19_49042638_49054111	1/0	g0001	202	29	39	105	4	24	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/1	g0002	122	31	22	49	6	13	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	g0003	13	12	1	0	0	0	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	g0004	12	1	8	0	1	2	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	g0005	5	5	0	0	0	0	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	g0006	4	4	0	0	0	0	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	g0007	3	0	0	1	0	2	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	g0008	3	3	0	0	0	0	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	g0009	2	0	0	0	2	0	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	g0010	2	1	1	0	0	0	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	g0011	2	1	1	0	0	0	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	g0012	1	0	1	0	0	0	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	g0013	1	1	0	0	0	0	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	g0014	1	1	0	0	0	0	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	g0015	1	1	0	0	0	0	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	g0016	1	0	1	0	0	0	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	g0017	1	0	1	0	0	0	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	g0018	1	0	0	1	0	0	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	g0019	1	1	0	0	0	0	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	g0020	1	0	0	1	0	0	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	g0021	1	0	1	0	0	0	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	g0022	1	1	0	0	0	0	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	g0023	1	0	0	1	0	0	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	g0024	1	0	0	1	0	0	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	g0025	1	0	0	1	0	0	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	g0026	1	0	0	0	0	1	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	g0027	1	0	0	1	0	0	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	g0028	1	0	0	1	0	0	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	g0029	1	0	0	0	1	0	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	g0030	1	0	1	0	0	0	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	g0031	1	0	0	1	0	0	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	g0032	1	0	0	1	0	0	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	g0033	1	1	0	0	0	0	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	g0034	1	0	1	0	0	0	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	g0035	1	1	0	0	0	0	CGB8	chr19	49042638	49054111
CGGBP1_chr3_88046950_88064005	0/1	g0001	141	4	41	71	6	18	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	g0002	35	9	8	12	2	4	CGGBP1	chr3	88046950	88064005