JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CGRRF1_chr14_54504906_54544292	0/0	g0209	1	0	0	1	0	0	CGRRF1	chr14	54504906	54544292
CGRRF1_chr14_54504906_54544292	0/0	g0210	1	0	0	1	0	0	CGRRF1	chr14	54504906	54544292
CGRRF1_chr14_54504906_54544292	0/0	g0211	1	0	0	0	0	1	CGRRF1	chr14	54504906	54544292
CGRRF1_chr14_54504906_54544292	0/0	g0212	1	1	0	0	0	0	CGRRF1	chr14	54504906	54544292
CGRRF1_chr14_54504906_54544292	0/0	g0213	1	0	0	1	0	0	CGRRF1	chr14	54504906	54544292
CGRRF1_chr14_54504906_54544292	0/0	g0214	1	0	0	0	0	1	CGRRF1	chr14	54504906	54544292
CGRRF1_chr14_54504906_54544292	0/0	g0215	1	1	0	0	0	0	CGRRF1	chr14	54504906	54544292
CGRRF1_chr14_54504906_54544292	0/0	g0216	1	1	0	0	0	0	CGRRF1	chr14	54504906	54544292
CGRRF1_chr14_54504906_54544292	0/0	g0217	1	1	0	0	0	0	CGRRF1	chr14	54504906	54544292
CH25H_chr10_89200629_89212317	1/1	g0000	384	94	74	154	16	44	CH25H	chr10	89200629	89212317
CHAC1_chr15_40948471_40961512	0/1	g0001	180	24	36	84	7	28	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	g0002	50	1	4	44	0	1	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	g0003	42	8	16	5	6	7	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	g0004	30	10	5	11	2	2	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	g0005	18	6	3	8	0	1	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	g0006	14	6	4	3	0	1	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	g0007	14	12	2	0	0	0	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	g0008	12	2	1	9	0	0	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	g0009	10	9	1	0	0	0	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	g0010	5	0	0	4	0	1	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	g0011	5	0	0	5	0	0	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	g0012	4	3	0	0	0	1	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	g0013	3	3	0	0	0	0	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	g0014	3	1	1	1	0	0	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	g0015	3	0	0	3	0	0	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	g0016	3	0	0	3	0	0	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	1/0	g0017	3	2	0	0	0	0	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	g0018	2	0	0	2	0	0	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	g0019	2	0	0	1	0	1	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	g0020	2	0	0	2	0	0	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	g0021	1	0	0	1	0	0	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	g0022	1	1	0	0	0	0	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	g0023	1	0	0	0	1	0	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	g0024	1	0	0	1	0	0	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	g0025	1	0	0	1	0	0	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	g0026	1	0	1	0	0	0	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	g0027	1	1	0	0	0	0	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	g0028	1	0	0	1	0	0	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	g0029	1	0	0	0	0	1	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	g0030	1	0	0	1	0	0	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	g0031	1	0	0	1	0	0	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	g0032	1	1	0	0	0	0	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	g0033	1	1	0	0	0	0	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	g0034	1	1	0	0	0	0	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	g0035	1	0	0	1	0	0	CHAC1	chr15	40948471	40961512
CHAC2_chr2_53762804_53780196	0/0	g0001	67	12	13	32	3	7	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/1	g0002	46	2	15	24	0	4	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0003	44	6	0	32	2	4	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0004	35	0	1	32	0	2	CHAC2	chr2	53762804	53780196
CHAC2_chr2_53762804_53780196	0/0	g0005	20	0	7	12	0	1	CHAC2	chr2	53762804	53780196